Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0691

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0689 and Dshi_0690 overlap by 4 nucleotidesDshi_0690 and Dshi_0691 overlap by 4 nucleotidesDshi_0691 and Dshi_0692 overlap by 4 nucleotides Dshi_0689: Dshi_0689 - isocitrate lyase family protein (RefSeq), at 694,835 to 695,713 _0689 Dshi_0690: Dshi_0690 - isochorismatase hydrolase (RefSeq), at 695,710 to 696,312 _0690 Dshi_0691: Dshi_0691 - 5-oxoprolinase (ATP-hydrolyzing) (RefSeq), at 696,309 to 698,378 _0691 Dshi_0692: Dshi_0692 - 5-oxoprolinase (ATP-hydrolyzing) (RefSeq), at 698,375 to 700,072 _0692 Position (kb) 696 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 695.323 kb on + strand, within Dshi_0689at 695.367 kb on + strand, within Dshi_0689at 695.375 kb on - strand, within Dshi_0689at 695.375 kb on - strand, within Dshi_0689at 695.377 kb on + strand, within Dshi_0689at 695.435 kb on - strand, within Dshi_0689at 695.458 kb on - strand, within Dshi_0689at 695.492 kb on - strand, within Dshi_0689at 695.545 kb on - strand, within Dshi_0689at 695.566 kb on + strand, within Dshi_0689at 695.568 kb on + strand, within Dshi_0689at 695.593 kb on + strand, within Dshi_0689at 695.767 kb on + strandat 695.775 kb on - strand, within Dshi_0690at 695.775 kb on - strand, within Dshi_0690at 695.793 kb on + strand, within Dshi_0690at 695.852 kb on - strand, within Dshi_0690at 695.861 kb on + strand, within Dshi_0690at 695.944 kb on + strand, within Dshi_0690at 695.944 kb on + strand, within Dshi_0690at 695.952 kb on - strand, within Dshi_0690at 695.957 kb on - strand, within Dshi_0690at 695.994 kb on + strand, within Dshi_0690at 696.001 kb on - strand, within Dshi_0690at 696.042 kb on - strand, within Dshi_0690at 696.232 kb on + strand, within Dshi_0690at 696.236 kb on + strand, within Dshi_0690at 696.340 kb on + strandat 696.369 kb on - strandat 696.421 kb on - strandat 696.447 kb on - strandat 696.447 kb on - strandat 696.544 kb on + strand, within Dshi_0691at 696.622 kb on + strand, within Dshi_0691at 696.628 kb on + strand, within Dshi_0691at 696.628 kb on + strand, within Dshi_0691at 696.708 kb on + strandat 696.729 kb on + strand, within Dshi_0691at 696.755 kb on + strand, within Dshi_0691at 696.953 kb on - strand, within Dshi_0691at 696.962 kb on + strand, within Dshi_0691at 696.988 kb on + strand, within Dshi_0691at 696.998 kb on - strand, within Dshi_0691at 696.998 kb on - strand, within Dshi_0691at 697.116 kb on - strand, within Dshi_0691at 697.216 kb on + strand, within Dshi_0691at 697.321 kb on - strand, within Dshi_0691at 697.377 kb on - strand, within Dshi_0691at 697.417 kb on + strand, within Dshi_0691at 697.440 kb on + strand, within Dshi_0691at 697.448 kb on - strand, within Dshi_0691at 697.448 kb on - strand, within Dshi_0691at 697.476 kb on + strand, within Dshi_0691at 697.500 kb on + strand, within Dshi_0691at 697.608 kb on + strand, within Dshi_0691at 697.635 kb on - strand, within Dshi_0691at 697.663 kb on + strand, within Dshi_0691at 697.707 kb on + strand, within Dshi_0691at 697.707 kb on + strand, within Dshi_0691at 697.721 kb on - strand, within Dshi_0691at 697.785 kb on - strand, within Dshi_0691at 697.851 kb on - strand, within Dshi_0691at 697.946 kb on + strand, within Dshi_0691at 697.977 kb on + strand, within Dshi_0691at 698.072 kb on + strand, within Dshi_0691at 698.074 kb on + strand, within Dshi_0691at 698.080 kb on - strand, within Dshi_0691at 698.144 kb on - strand, within Dshi_0691at 698.237 kb on + strandat 698.422 kb on + strandat 698.489 kb on + strandat 698.757 kb on - strand, within Dshi_0692at 698.825 kb on + strandat 698.928 kb on + strand, within Dshi_0692at 698.936 kb on - strand, within Dshi_0692at 698.936 kb on - strand, within Dshi_0692at 698.949 kb on + strand, within Dshi_0692at 698.975 kb on + strand, within Dshi_0692at 699.101 kb on + strand, within Dshi_0692at 699.107 kb on - strand, within Dshi_0692at 699.117 kb on - strand, within Dshi_0692at 699.195 kb on + strand, within Dshi_0692at 699.213 kb on - strand, within Dshi_0692

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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695,323 + Dshi_0689 0.56 +1.2
695,367 + Dshi_0689 0.61 +0.1
695,375 - Dshi_0689 0.61 +0.7
695,375 - Dshi_0689 0.61 +0.0
695,377 + Dshi_0689 0.62 +1.4
695,435 - Dshi_0689 0.68 -1.0
695,458 - Dshi_0689 0.71 -0.7
695,492 - Dshi_0689 0.75 +2.4
695,545 - Dshi_0689 0.81 +1.0
695,566 + Dshi_0689 0.83 -1.9
695,568 + Dshi_0689 0.83 +0.2
695,593 + Dshi_0689 0.86 -0.7
695,767 + +0.2
695,775 - Dshi_0690 0.11 -0.4
695,775 - Dshi_0690 0.11 -2.2
695,793 + Dshi_0690 0.14 +2.0
695,852 - Dshi_0690 0.24 -2.4
695,861 + Dshi_0690 0.25 -1.0
695,944 + Dshi_0690 0.39 +2.4
695,944 + Dshi_0690 0.39 +2.0
695,952 - Dshi_0690 0.40 +1.5
695,957 - Dshi_0690 0.41 +0.9
695,994 + Dshi_0690 0.47 +1.7
696,001 - Dshi_0690 0.48 +3.1
696,042 - Dshi_0690 0.55 +1.1
696,232 + Dshi_0690 0.87 +0.4
696,236 + Dshi_0690 0.87 +0.1
696,340 + +0.8
696,369 - +1.4
696,421 - +1.4
696,447 - +0.2
696,447 - +0.8
696,544 + Dshi_0691 0.11 +0.7
696,622 + Dshi_0691 0.15 +0.0
696,628 + Dshi_0691 0.15 +0.8
696,628 + Dshi_0691 0.15 -2.2
696,708 + +2.4
696,729 + Dshi_0691 0.20 +0.8
696,755 + Dshi_0691 0.22 +2.4
696,953 - Dshi_0691 0.31 +0.4
696,962 + Dshi_0691 0.32 +2.4
696,988 + Dshi_0691 0.33 +0.8
696,998 - Dshi_0691 0.33 -0.4
696,998 - Dshi_0691 0.33 -1.9
697,116 - Dshi_0691 0.39 -0.9
697,216 + Dshi_0691 0.44 -1.6
697,321 - Dshi_0691 0.49 -1.3
697,377 - Dshi_0691 0.52 +0.1
697,417 + Dshi_0691 0.54 -0.2
697,440 + Dshi_0691 0.55 -1.0
697,448 - Dshi_0691 0.55 +2.4
697,448 - Dshi_0691 0.55 -2.3
697,476 + Dshi_0691 0.56 +2.8
697,500 + Dshi_0691 0.58 +0.4
697,608 + Dshi_0691 0.63 +4.0
697,635 - Dshi_0691 0.64 +0.2
697,663 + Dshi_0691 0.65 -0.8
697,707 + Dshi_0691 0.68 -1.1
697,707 + Dshi_0691 0.68 +0.6
697,721 - Dshi_0691 0.68 +1.3
697,785 - Dshi_0691 0.71 -0.6
697,851 - Dshi_0691 0.74 -0.6
697,946 + Dshi_0691 0.79 -2.4
697,977 + Dshi_0691 0.81 -2.0
698,072 + Dshi_0691 0.85 +1.0
698,074 + Dshi_0691 0.85 -2.9
698,080 - Dshi_0691 0.86 -1.0
698,144 - Dshi_0691 0.89 +0.2
698,237 + -1.0
698,422 + -0.3
698,489 + +0.6
698,757 - Dshi_0692 0.22 +0.1
698,825 + -0.6
698,928 + Dshi_0692 0.33 -0.3
698,936 - Dshi_0692 0.33 +0.4
698,936 - Dshi_0692 0.33 +1.5
698,949 + Dshi_0692 0.34 +0.2
698,975 + Dshi_0692 0.35 -0.5
699,101 + Dshi_0692 0.43 +0.4
699,107 - Dshi_0692 0.43 -0.2
699,117 - Dshi_0692 0.44 +0.1
699,195 + Dshi_0692 0.48 +1.0
699,213 - Dshi_0692 0.49 +0.2

Or see this region's nucleotide sequence