Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0684 and Dshi_0685 are separated by 7 nucleotides Dshi_0685 and Dshi_0686 overlap by 4 nucleotides Dshi_0686 and Dshi_0687 are separated by 107 nucleotides
Dshi_0684: Dshi_0684 - protein of unknown function DUF1150 (RefSeq), at 689,230 to 689,457
_0684
Dshi_0685: Dshi_0685 - ApbE family lipoprotein (RefSeq), at 689,465 to 690,361
_0685
Dshi_0686: Dshi_0686 - regulatory protein, putative (RefSeq), at 690,358 to 692,448
_0686
Dshi_0687: Dshi_0687 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 692,556 to 693,332
_0687
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 689.508 kb on - strand at 689.518 kb on - strand at 689.628 kb on - strand, within Dshi_0685 at 689.695 kb on + strand, within Dshi_0685 at 689.780 kb on - strand, within Dshi_0685 at 689.840 kb on - strand, within Dshi_0685 at 689.892 kb on - strand, within Dshi_0685 at 689.902 kb on + strand, within Dshi_0685 at 689.949 kb on - strand, within Dshi_0685 at 689.951 kb on + strand, within Dshi_0685 at 690.041 kb on - strand, within Dshi_0685 at 690.133 kb on - strand, within Dshi_0685 at 690.186 kb on - strand, within Dshi_0685 at 690.212 kb on - strand, within Dshi_0685 at 690.368 kb on + strand at 690.414 kb on - strand at 690.433 kb on + strand at 690.515 kb on + strand at 690.598 kb on + strand, within Dshi_0686 at 690.608 kb on + strand, within Dshi_0686 at 690.643 kb on + strand, within Dshi_0686 at 690.646 kb on - strand, within Dshi_0686 at 690.686 kb on + strand, within Dshi_0686 at 690.694 kb on - strand, within Dshi_0686 at 690.733 kb on - strand, within Dshi_0686 at 690.780 kb on - strand, within Dshi_0686 at 690.826 kb on - strand, within Dshi_0686 at 690.915 kb on + strand, within Dshi_0686 at 690.980 kb on - strand, within Dshi_0686 at 691.003 kb on - strand, within Dshi_0686 at 691.035 kb on - strand, within Dshi_0686 at 691.083 kb on - strand, within Dshi_0686 at 691.088 kb on - strand, within Dshi_0686 at 691.141 kb on - strand, within Dshi_0686 at 691.234 kb on - strand, within Dshi_0686 at 691.253 kb on - strand, within Dshi_0686 at 691.307 kb on - strand at 691.377 kb on + strand, within Dshi_0686 at 691.457 kb on - strand, within Dshi_0686 at 691.488 kb on + strand, within Dshi_0686 at 691.553 kb on + strand, within Dshi_0686 at 691.661 kb on - strand, within Dshi_0686 at 691.719 kb on + strand, within Dshi_0686 at 691.719 kb on + strand, within Dshi_0686 at 691.727 kb on - strand, within Dshi_0686 at 691.810 kb on + strand, within Dshi_0686 at 691.810 kb on + strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.818 kb on - strand, within Dshi_0686 at 691.837 kb on - strand, within Dshi_0686 at 691.899 kb on + strand, within Dshi_0686 at 691.899 kb on + strand, within Dshi_0686 at 691.913 kb on + strand, within Dshi_0686 at 691.923 kb on + strand, within Dshi_0686 at 691.996 kb on - strand, within Dshi_0686 at 692.196 kb on + strand, within Dshi_0686 at 692.431 kb on + strand at 692.519 kb on + strand at 692.540 kb on + strand at 692.592 kb on + strand at 692.613 kb on - strand at 692.637 kb on + strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.805 kb on + strand, within Dshi_0687 at 692.823 kb on + strand, within Dshi_0687 at 692.956 kb on - strand, within Dshi_0687 at 693.112 kb on + strand, within Dshi_0687 at 693.203 kb on + strand, within Dshi_0687 at 693.232 kb on - strand, within Dshi_0687 at 693.368 kb on - strand at 693.393 kb on + strand at 693.440 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 689,508 - -0.2 689,518 - -3.3 689,628 - Dshi_0685 0.18 -1.4 689,695 + Dshi_0685 0.26 -0.8 689,780 - Dshi_0685 0.35 +0.4 689,840 - Dshi_0685 0.42 +0.2 689,892 - Dshi_0685 0.48 -0.6 689,902 + Dshi_0685 0.49 +1.9 689,949 - Dshi_0685 0.54 -1.0 689,951 + Dshi_0685 0.54 +1.1 690,041 - Dshi_0685 0.64 +2.3 690,133 - Dshi_0685 0.74 +1.1 690,186 - Dshi_0685 0.80 +0.0 690,212 - Dshi_0685 0.83 +0.3 690,368 + +0.3 690,414 - +0.8 690,433 + +1.4 690,515 + -3.0 690,598 + Dshi_0686 0.11 +1.3 690,608 + Dshi_0686 0.12 -0.8 690,643 + Dshi_0686 0.14 +0.3 690,646 - Dshi_0686 0.14 +1.4 690,686 + Dshi_0686 0.16 +0.0 690,694 - Dshi_0686 0.16 +0.8 690,733 - Dshi_0686 0.18 +0.8 690,780 - Dshi_0686 0.20 -1.9 690,826 - Dshi_0686 0.22 +0.3 690,915 + Dshi_0686 0.27 -0.7 690,980 - Dshi_0686 0.30 -0.1 691,003 - Dshi_0686 0.31 -0.6 691,035 - Dshi_0686 0.32 -0.9 691,083 - Dshi_0686 0.35 +1.0 691,088 - Dshi_0686 0.35 +2.4 691,141 - Dshi_0686 0.37 -0.8 691,234 - Dshi_0686 0.42 -0.7 691,253 - Dshi_0686 0.43 +0.6 691,307 - +1.6 691,377 + Dshi_0686 0.49 +0.8 691,457 - Dshi_0686 0.53 -0.9 691,488 + Dshi_0686 0.54 +2.3 691,553 + Dshi_0686 0.57 -1.6 691,661 - Dshi_0686 0.62 -1.0 691,719 + Dshi_0686 0.65 +0.6 691,719 + Dshi_0686 0.65 +1.4 691,727 - Dshi_0686 0.65 -0.8 691,810 + Dshi_0686 0.69 +0.1 691,810 + Dshi_0686 0.69 +0.4 691,818 - Dshi_0686 0.70 +0.8 691,818 - Dshi_0686 0.70 -1.8 691,818 - Dshi_0686 0.70 +1.1 691,837 - Dshi_0686 0.71 +0.3 691,899 + Dshi_0686 0.74 -2.5 691,899 + Dshi_0686 0.74 -1.2 691,913 + Dshi_0686 0.74 -1.4 691,923 + Dshi_0686 0.75 -0.6 691,996 - Dshi_0686 0.78 -0.0 692,196 + Dshi_0686 0.88 +0.8 692,431 + +0.2 692,519 + +0.1 692,540 + +0.1 692,592 + -0.2 692,613 - -2.5 692,637 + Dshi_0687 0.10 +3.0 692,684 - Dshi_0687 0.16 -0.2 692,684 - Dshi_0687 0.16 -0.3 692,805 + Dshi_0687 0.32 -0.3 692,823 + Dshi_0687 0.34 -2.4 692,956 - Dshi_0687 0.51 -1.3 693,112 + Dshi_0687 0.72 +1.0 693,203 + Dshi_0687 0.83 -2.0 693,232 - Dshi_0687 0.87 -1.5 693,368 - -0.4 693,393 + -0.4 693,440 + -1.9
Or see this region's nucleotide sequence