Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0674 and Dshi_0675 are separated by 154 nucleotides Dshi_0675 and Dshi_0676 are separated by 138 nucleotides
Dshi_0674: Dshi_0674 - Coproporphyrinogen oxidase (RefSeq), at 678,666 to 679,559
_0674
Dshi_0675: Dshi_0675 - gamma-glutamyltransferase (RefSeq), at 679,714 to 681,504
_0675
Dshi_0676: Dshi_0676 - beta-lactamase (RefSeq), at 681,643 to 683,742
_0676
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 679.643 kb on - strand at 679.681 kb on + strand at 679.777 kb on - strand at 680.213 kb on - strand, within Dshi_0675 at 680.481 kb on + strand, within Dshi_0675 at 680.528 kb on - strand, within Dshi_0675 at 680.615 kb on - strand, within Dshi_0675 at 680.683 kb on - strand, within Dshi_0675 at 680.773 kb on - strand, within Dshi_0675 at 680.866 kb on + strand, within Dshi_0675 at 680.868 kb on - strand, within Dshi_0675 at 680.873 kb on - strand, within Dshi_0675 at 680.936 kb on - strand, within Dshi_0675 at 680.948 kb on + strand, within Dshi_0675 at 681.006 kb on + strand, within Dshi_0675 at 681.014 kb on - strand, within Dshi_0675 at 681.032 kb on + strand, within Dshi_0675 at 681.032 kb on + strand, within Dshi_0675 at 681.074 kb on - strand, within Dshi_0675 at 681.074 kb on - strand, within Dshi_0675 at 681.348 kb on + strand at 681.393 kb on - strand at 681.419 kb on + strand at 681.419 kb on + strand at 681.420 kb on - strand at 681.427 kb on - strand at 681.472 kb on - strand at 681.477 kb on + strand at 681.506 kb on - strand at 681.511 kb on - strand at 681.545 kb on - strand at 681.549 kb on + strand at 681.630 kb on + strand at 681.638 kb on - strand at 681.689 kb on - strand at 681.689 kb on - strand at 681.691 kb on + strand at 681.697 kb on + strand at 681.702 kb on + strand at 681.788 kb on + strand at 681.814 kb on - strand at 681.957 kb on + strand, within Dshi_0676 at 681.992 kb on + strand, within Dshi_0676 at 681.992 kb on + strand, within Dshi_0676 at 682.000 kb on - strand, within Dshi_0676 at 682.000 kb on - strand, within Dshi_0676 at 682.000 kb on - strand, within Dshi_0676 at 682.000 kb on - strand, within Dshi_0676 at 682.074 kb on + strand, within Dshi_0676 at 682.179 kb on - strand, within Dshi_0676 at 682.247 kb on - strand, within Dshi_0676 at 682.294 kb on - strand, within Dshi_0676 at 682.343 kb on - strand, within Dshi_0676
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 679,643 - +0.3 679,681 + +2.4 679,777 - +0.4 680,213 - Dshi_0675 0.28 -2.3 680,481 + Dshi_0675 0.43 -0.6 680,528 - Dshi_0675 0.45 -0.4 680,615 - Dshi_0675 0.50 +0.9 680,683 - Dshi_0675 0.54 -0.2 680,773 - Dshi_0675 0.59 -1.1 680,866 + Dshi_0675 0.64 -0.6 680,868 - Dshi_0675 0.64 +2.4 680,873 - Dshi_0675 0.65 -0.1 680,936 - Dshi_0675 0.68 -0.3 680,948 + Dshi_0675 0.69 -1.2 681,006 + Dshi_0675 0.72 -1.9 681,014 - Dshi_0675 0.73 +0.1 681,032 + Dshi_0675 0.74 -1.5 681,032 + Dshi_0675 0.74 -0.1 681,074 - Dshi_0675 0.76 +2.4 681,074 - Dshi_0675 0.76 +0.4 681,348 + -1.4 681,393 - -0.3 681,419 + +0.8 681,419 + +0.6 681,420 - -1.6 681,427 - -0.4 681,472 - -0.0 681,477 + -1.6 681,506 - +1.1 681,511 - +0.1 681,545 - -1.0 681,549 + +0.9 681,630 + -0.4 681,638 - -0.6 681,689 - -0.1 681,689 - +0.7 681,691 + -2.8 681,697 + -0.4 681,702 + +1.5 681,788 + +0.6 681,814 - -2.4 681,957 + Dshi_0676 0.15 +0.9 681,992 + Dshi_0676 0.17 +1.3 681,992 + Dshi_0676 0.17 +0.9 682,000 - Dshi_0676 0.17 +0.8 682,000 - Dshi_0676 0.17 +0.8 682,000 - Dshi_0676 0.17 -1.4 682,000 - Dshi_0676 0.17 +2.4 682,074 + Dshi_0676 0.21 -0.2 682,179 - Dshi_0676 0.26 -1.8 682,247 - Dshi_0676 0.29 +1.7 682,294 - Dshi_0676 0.31 -1.2 682,343 - Dshi_0676 0.33 -0.7
Or see this region's nucleotide sequence