Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0659 and Dshi_0660 are separated by 52 nucleotides Dshi_0660 and Dshi_0661 are separated by 337 nucleotides
Dshi_0659: Dshi_0659 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 662,948 to 664,309
_0659
Dshi_0660: Dshi_0660 - transcriptional regulator, Crp/Fnr family (RefSeq), at 664,362 to 665,111
_0660
Dshi_0661: Dshi_0661 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 665,449 to 667,050
_0661
Position (kb) 664
665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 663.375 kb on - strand, within Dshi_0659 at 663.508 kb on + strand, within Dshi_0659 at 663.516 kb on - strand, within Dshi_0659 at 663.520 kb on + strand, within Dshi_0659 at 663.530 kb on + strand, within Dshi_0659 at 663.818 kb on + strand, within Dshi_0659 at 663.840 kb on + strand, within Dshi_0659 at 663.855 kb on + strand, within Dshi_0659 at 663.875 kb on + strand, within Dshi_0659 at 664.090 kb on - strand, within Dshi_0659 at 664.095 kb on - strand, within Dshi_0659 at 664.209 kb on + strand at 664.234 kb on + strand at 664.324 kb on - strand at 664.338 kb on - strand at 664.349 kb on - strand at 664.439 kb on - strand, within Dshi_0660 at 664.442 kb on + strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.474 kb on + strand, within Dshi_0660 at 664.727 kb on + strand, within Dshi_0660 at 664.916 kb on - strand, within Dshi_0660 at 665.294 kb on + strand at 665.392 kb on - strand at 665.443 kb on + strand at 665.548 kb on + strand at 665.556 kb on - strand at 665.590 kb on - strand at 665.683 kb on + strand, within Dshi_0661 at 665.686 kb on + strand, within Dshi_0661 at 665.759 kb on - strand, within Dshi_0661 at 665.759 kb on - strand, within Dshi_0661 at 665.796 kb on - strand, within Dshi_0661 at 665.796 kb on - strand, within Dshi_0661 at 665.859 kb on + strand, within Dshi_0661 at 665.976 kb on + strand, within Dshi_0661 at 666.035 kb on + strand, within Dshi_0661
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 663,375 - Dshi_0659 0.31 -0.8 663,508 + Dshi_0659 0.41 +1.2 663,516 - Dshi_0659 0.42 -3.0 663,520 + Dshi_0659 0.42 -0.1 663,530 + Dshi_0659 0.43 +0.4 663,818 + Dshi_0659 0.64 -0.4 663,840 + Dshi_0659 0.65 +1.7 663,855 + Dshi_0659 0.67 -0.4 663,875 + Dshi_0659 0.68 -0.9 664,090 - Dshi_0659 0.84 +1.5 664,095 - Dshi_0659 0.84 -0.2 664,209 + +1.2 664,234 + -0.2 664,324 - -0.2 664,338 - -0.1 664,349 - -0.7 664,439 - Dshi_0660 0.10 -1.4 664,442 + Dshi_0660 0.11 +0.2 664,450 - Dshi_0660 0.12 -0.6 664,450 - Dshi_0660 0.12 -0.7 664,450 - Dshi_0660 0.12 -3.1 664,474 + Dshi_0660 0.15 -0.9 664,727 + Dshi_0660 0.49 -0.6 664,916 - Dshi_0660 0.74 -0.9 665,294 + -2.5 665,392 - -0.2 665,443 + -0.2 665,548 + -1.6 665,556 - +0.2 665,590 - +0.2 665,683 + Dshi_0661 0.15 +1.2 665,686 + Dshi_0661 0.15 +0.1 665,759 - Dshi_0661 0.19 +0.0 665,759 - Dshi_0661 0.19 -3.4 665,796 - Dshi_0661 0.22 -0.3 665,796 - Dshi_0661 0.22 -2.3 665,859 + Dshi_0661 0.26 -0.8 665,976 + Dshi_0661 0.33 +1.8 666,035 + Dshi_0661 0.37 +0.5
Or see this region's nucleotide sequence