Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0549

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0547 and Dshi_0548 are separated by 74 nucleotidesDshi_0548 and Dshi_0549 are separated by 3 nucleotidesDshi_0549 and Dshi_0550 are separated by 68 nucleotides Dshi_0547: Dshi_0547 - ABC transporter for Xylitol, periplasmic substrate-binding component (from data), at 534,071 to 535,414 _0547 Dshi_0548: Dshi_0548 - ABC transporter for Xylitol, permease component 1 (from data), at 535,489 to 536,355 _0548 Dshi_0549: Dshi_0549 - ABC transporter for Xylitol, permease component 2 (from data), at 536,359 to 537,177 _0549 Dshi_0550: Dshi_0550 - transcriptional regulator, DeoR family (RefSeq), at 537,246 to 538,217 _0550 Position (kb) 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 535.446 kb on - strandat 535.475 kb on + strandat 535.504 kb on - strandat 535.554 kb on - strandat 535.554 kb on - strandat 535.583 kb on - strand, within Dshi_0548at 535.604 kb on + strand, within Dshi_0548at 535.653 kb on + strand, within Dshi_0548at 535.671 kb on - strand, within Dshi_0548at 535.723 kb on + strand, within Dshi_0548at 535.770 kb on + strand, within Dshi_0548at 535.781 kb on + strand, within Dshi_0548at 535.788 kb on - strand, within Dshi_0548at 535.788 kb on - strand, within Dshi_0548at 535.789 kb on - strand, within Dshi_0548at 535.789 kb on - strand, within Dshi_0548at 535.814 kb on + strand, within Dshi_0548at 535.836 kb on + strand, within Dshi_0548at 535.838 kb on + strand, within Dshi_0548at 535.846 kb on - strand, within Dshi_0548at 535.846 kb on - strand, within Dshi_0548at 535.911 kb on - strand, within Dshi_0548at 535.983 kb on - strand, within Dshi_0548at 535.988 kb on + strand, within Dshi_0548at 535.991 kb on + strand, within Dshi_0548at 535.991 kb on + strand, within Dshi_0548at 536.017 kb on + strand, within Dshi_0548at 536.017 kb on + strand, within Dshi_0548at 536.017 kb on + strand, within Dshi_0548at 536.017 kb on + strand, within Dshi_0548at 536.025 kb on - strand, within Dshi_0548at 536.025 kb on - strand, within Dshi_0548at 536.032 kb on - strand, within Dshi_0548at 536.083 kb on + strand, within Dshi_0548at 536.091 kb on - strand, within Dshi_0548at 536.115 kb on + strand, within Dshi_0548at 536.120 kb on + strand, within Dshi_0548at 536.195 kb on - strand, within Dshi_0548at 536.197 kb on - strand, within Dshi_0548at 536.213 kb on - strand, within Dshi_0548at 536.263 kb on - strand, within Dshi_0548at 536.285 kb on + strandat 536.349 kb on + strandat 536.349 kb on + strandat 536.361 kb on + strandat 536.401 kb on + strandat 536.414 kb on - strandat 536.775 kb on + strand, within Dshi_0549at 536.784 kb on - strand, within Dshi_0549at 536.792 kb on + strand, within Dshi_0549at 536.794 kb on - strand, within Dshi_0549at 536.800 kb on - strand, within Dshi_0549at 536.854 kb on - strand, within Dshi_0549at 536.864 kb on - strand, within Dshi_0549at 536.871 kb on + strand, within Dshi_0549at 536.879 kb on + strand, within Dshi_0549at 536.879 kb on + strand, within Dshi_0549at 536.906 kb on + strand, within Dshi_0549at 536.917 kb on + strand, within Dshi_0549at 536.924 kb on - strand, within Dshi_0549at 536.925 kb on - strand, within Dshi_0549at 536.994 kb on + strand, within Dshi_0549at 537.005 kb on + strand, within Dshi_0549at 537.022 kb on + strand, within Dshi_0549at 537.027 kb on + strand, within Dshi_0549at 537.035 kb on - strand, within Dshi_0549at 537.035 kb on - strand, within Dshi_0549at 537.053 kb on + strand, within Dshi_0549at 537.053 kb on + strand, within Dshi_0549at 537.053 kb on + strand, within Dshi_0549at 537.061 kb on - strand, within Dshi_0549at 537.061 kb on - strand, within Dshi_0549at 537.061 kb on - strand, within Dshi_0549at 537.061 kb on - strand, within Dshi_0549at 537.083 kb on - strand, within Dshi_0549at 537.083 kb on - strand, within Dshi_0549at 537.109 kb on + strandat 537.275 kb on - strandat 537.327 kb on + strandat 537.382 kb on + strand, within Dshi_0550at 537.399 kb on + strand, within Dshi_0550at 537.438 kb on + strand, within Dshi_0550at 537.481 kb on + strand, within Dshi_0550at 537.481 kb on + strand, within Dshi_0550at 537.487 kb on + strand, within Dshi_0550at 537.495 kb on - strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.553 kb on - strand, within Dshi_0550at 537.558 kb on - strand, within Dshi_0550at 537.563 kb on - strand, within Dshi_0550at 537.569 kb on + strand, within Dshi_0550at 537.569 kb on + strand, within Dshi_0550at 537.575 kb on - strand, within Dshi_0550at 537.657 kb on + strand, within Dshi_0550at 537.672 kb on + strand, within Dshi_0550at 537.680 kb on - strand, within Dshi_0550at 537.680 kb on - strand, within Dshi_0550at 537.712 kb on + strand, within Dshi_0550at 537.748 kb on + strand, within Dshi_0550at 537.791 kb on + strand, within Dshi_0550at 537.791 kb on + strand, within Dshi_0550at 537.798 kb on - strand, within Dshi_0550at 537.836 kb on + strand, within Dshi_0550at 537.845 kb on - strand, within Dshi_0550at 537.921 kb on - strand, within Dshi_0550at 537.929 kb on - strand, within Dshi_0550at 537.952 kb on - strand, within Dshi_0550at 537.967 kb on + strand, within Dshi_0550at 537.975 kb on - strand, within Dshi_0550at 537.976 kb on + strand, within Dshi_0550at 537.977 kb on + strand, within Dshi_0550at 537.977 kb on + strand, within Dshi_0550at 537.979 kb on - strand, within Dshi_0550at 537.983 kb on + strand, within Dshi_0550at 537.984 kb on - strand, within Dshi_0550at 538.002 kb on - strand, within Dshi_0550at 538.135 kb on - strandat 538.137 kb on + strandat 538.137 kb on + strandat 538.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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535,446 - -1.4
535,475 + -1.0
535,504 - -0.6
535,554 - -1.1
535,554 - -0.5
535,583 - Dshi_0548 0.11 -1.8
535,604 + Dshi_0548 0.13 -1.2
535,653 + Dshi_0548 0.19 -1.9
535,671 - Dshi_0548 0.21 -0.1
535,723 + Dshi_0548 0.27 -1.5
535,770 + Dshi_0548 0.32 -0.4
535,781 + Dshi_0548 0.34 -3.5
535,788 - Dshi_0548 0.34 -2.1
535,788 - Dshi_0548 0.34 -1.9
535,789 - Dshi_0548 0.35 -0.1
535,789 - Dshi_0548 0.35 -2.3
535,814 + Dshi_0548 0.37 -0.9
535,836 + Dshi_0548 0.40 -1.5
535,838 + Dshi_0548 0.40 -1.7
535,846 - Dshi_0548 0.41 -1.0
535,846 - Dshi_0548 0.41 +0.4
535,911 - Dshi_0548 0.49 -0.2
535,983 - Dshi_0548 0.57 -1.3
535,988 + Dshi_0548 0.58 +0.1
535,991 + Dshi_0548 0.58 -0.9
535,991 + Dshi_0548 0.58 -4.1
536,017 + Dshi_0548 0.61 -0.4
536,017 + Dshi_0548 0.61 -1.0
536,017 + Dshi_0548 0.61 -2.5
536,017 + Dshi_0548 0.61 -0.8
536,025 - Dshi_0548 0.62 -0.5
536,025 - Dshi_0548 0.62 -1.5
536,032 - Dshi_0548 0.63 +0.5
536,083 + Dshi_0548 0.69 -3.0
536,091 - Dshi_0548 0.69 +0.2
536,115 + Dshi_0548 0.72 +0.4
536,120 + Dshi_0548 0.73 -1.6
536,195 - Dshi_0548 0.81 +0.2
536,197 - Dshi_0548 0.82 +1.1
536,213 - Dshi_0548 0.84 +0.9
536,263 - Dshi_0548 0.89 -1.3
536,285 + -2.6
536,349 + +1.0
536,349 + -0.8
536,361 + -1.2
536,401 + -0.6
536,414 - -1.6
536,775 + Dshi_0549 0.51 -0.9
536,784 - Dshi_0549 0.52 -0.6
536,792 + Dshi_0549 0.53 -2.3
536,794 - Dshi_0549 0.53 -3.5
536,800 - Dshi_0549 0.54 -0.3
536,854 - Dshi_0549 0.60 +0.0
536,864 - Dshi_0549 0.62 -0.4
536,871 + Dshi_0549 0.63 +0.9
536,879 + Dshi_0549 0.63 -1.1
536,879 + Dshi_0549 0.63 -3.0
536,906 + Dshi_0549 0.67 -1.0
536,917 + Dshi_0549 0.68 -0.5
536,924 - Dshi_0549 0.69 +0.5
536,925 - Dshi_0549 0.69 -0.7
536,994 + Dshi_0549 0.78 +1.6
537,005 + Dshi_0549 0.79 -0.0
537,022 + Dshi_0549 0.81 +0.3
537,027 + Dshi_0549 0.82 -1.1
537,035 - Dshi_0549 0.83 -1.7
537,035 - Dshi_0549 0.83 -0.5
537,053 + Dshi_0549 0.85 -1.3
537,053 + Dshi_0549 0.85 -0.0
537,053 + Dshi_0549 0.85 +1.1
537,061 - Dshi_0549 0.86 -1.6
537,061 - Dshi_0549 0.86 -0.1
537,061 - Dshi_0549 0.86 +0.8
537,061 - Dshi_0549 0.86 -1.0
537,083 - Dshi_0549 0.88 -0.5
537,083 - Dshi_0549 0.88 +0.4
537,109 + -1.8
537,275 - -1.5
537,327 + -0.5
537,382 + Dshi_0550 0.14 -1.4
537,399 + Dshi_0550 0.16 +0.6
537,438 + Dshi_0550 0.20 +0.0
537,481 + Dshi_0550 0.24 -1.7
537,481 + Dshi_0550 0.24 -0.2
537,487 + Dshi_0550 0.25 +0.0
537,495 - Dshi_0550 0.26 +0.2
537,550 + Dshi_0550 0.31 -1.9
537,550 + Dshi_0550 0.31 -0.2
537,550 + Dshi_0550 0.31 -0.6
537,550 + Dshi_0550 0.31 -0.4
537,550 + Dshi_0550 0.31 -1.0
537,550 + Dshi_0550 0.31 +0.4
537,553 - Dshi_0550 0.32 -1.9
537,558 - Dshi_0550 0.32 -2.3
537,563 - Dshi_0550 0.33 -1.2
537,569 + Dshi_0550 0.33 -0.1
537,569 + Dshi_0550 0.33 -2.2
537,575 - Dshi_0550 0.34 -0.8
537,657 + Dshi_0550 0.42 -0.0
537,672 + Dshi_0550 0.44 -0.9
537,680 - Dshi_0550 0.45 -0.7
537,680 - Dshi_0550 0.45 -2.9
537,712 + Dshi_0550 0.48 +0.2
537,748 + Dshi_0550 0.52 +1.1
537,791 + Dshi_0550 0.56 -1.4
537,791 + Dshi_0550 0.56 +0.5
537,798 - Dshi_0550 0.57 -1.8
537,836 + Dshi_0550 0.61 -0.0
537,845 - Dshi_0550 0.62 +2.6
537,921 - Dshi_0550 0.69 -1.0
537,929 - Dshi_0550 0.70 -0.4
537,952 - Dshi_0550 0.73 -1.3
537,967 + Dshi_0550 0.74 -1.1
537,975 - Dshi_0550 0.75 -1.7
537,976 + Dshi_0550 0.75 -0.5
537,977 + Dshi_0550 0.75 -1.1
537,977 + Dshi_0550 0.75 -1.1
537,979 - Dshi_0550 0.75 -0.1
537,983 + Dshi_0550 0.76 +0.2
537,984 - Dshi_0550 0.76 -0.3
538,002 - Dshi_0550 0.78 -0.3
538,135 - -0.2
538,137 + +0.7
538,137 + -1.1
538,174 - -0.9

Or see this region's nucleotide sequence