Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0482

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0481 and Dshi_0482 are separated by 467 nucleotidesDshi_0482 and Dshi_0483 are separated by 158 nucleotides Dshi_0481: Dshi_0481 - hypothetical protein (RefSeq), at 466,019 to 466,831 _0481 Dshi_0482: Dshi_0482 - hypothetical protein (RefSeq), at 467,299 to 467,784 _0482 Dshi_0483: Dshi_0483 - hypothetical protein (RefSeq), at 467,943 to 469,130 _0483 Position (kb) 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 466.331 kb on + strand, within Dshi_0481at 466.334 kb on - strand, within Dshi_0481at 466.351 kb on - strand, within Dshi_0481at 466.433 kb on - strand, within Dshi_0481at 466.486 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.637 kb on + strand, within Dshi_0481at 466.637 kb on + strand, within Dshi_0481at 466.674 kb on - strand, within Dshi_0481at 466.702 kb on + strand, within Dshi_0481at 466.702 kb on + strand, within Dshi_0481at 466.703 kb on - strand, within Dshi_0481at 466.710 kb on - strand, within Dshi_0481at 466.710 kb on - strand, within Dshi_0481at 466.731 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.751 kb on - strandat 466.751 kb on - strandat 466.751 kb on - strandat 466.751 kb on - strandat 466.763 kb on - strandat 466.763 kb on - strandat 466.786 kb on + strandat 466.799 kb on - strandat 466.799 kb on - strandat 466.819 kb on - strandat 466.854 kb on + strandat 466.856 kb on + strandat 466.864 kb on - strandat 466.891 kb on + strandat 466.894 kb on - strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.971 kb on - strandat 466.971 kb on - strandat 466.971 kb on - strandat 466.986 kb on + strandat 467.017 kb on + strandat 467.025 kb on - strandat 467.025 kb on - strandat 467.045 kb on + strandat 467.059 kb on + strandat 467.159 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.169 kb on + strandat 467.177 kb on - strandat 467.177 kb on - strandat 467.211 kb on - strandat 467.217 kb on - strandat 467.252 kb on + strandat 467.252 kb on + strandat 467.253 kb on + strandat 467.253 kb on + strandat 467.271 kb on + strandat 467.271 kb on + strandat 467.286 kb on + strandat 467.294 kb on - strandat 467.334 kb on - strandat 467.346 kb on + strandat 467.351 kb on + strand, within Dshi_0482at 467.354 kb on - strand, within Dshi_0482at 467.356 kb on + strand, within Dshi_0482at 467.356 kb on + strand, within Dshi_0482at 467.356 kb on + strand, within Dshi_0482at 467.361 kb on + strand, within Dshi_0482at 467.364 kb on - strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.393 kb on + strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.401 kb on - strand, within Dshi_0482at 467.403 kb on + strand, within Dshi_0482at 467.411 kb on - strand, within Dshi_0482at 467.411 kb on - strand, within Dshi_0482at 467.427 kb on + strand, within Dshi_0482at 467.427 kb on + strand, within Dshi_0482at 467.427 kb on + strand, within Dshi_0482at 467.435 kb on - strand, within Dshi_0482at 467.435 kb on - strand, within Dshi_0482at 467.435 kb on - strand, within Dshi_0482at 467.452 kb on + strand, within Dshi_0482at 467.453 kb on - strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.482 kb on + strand, within Dshi_0482at 467.490 kb on - strand, within Dshi_0482at 467.495 kb on + strand, within Dshi_0482at 467.495 kb on + strand, within Dshi_0482at 467.500 kb on + strand, within Dshi_0482at 467.587 kb on - strand, within Dshi_0482at 467.589 kb on + strand, within Dshi_0482at 467.589 kb on + strand, within Dshi_0482at 467.597 kb on + strand, within Dshi_0482at 467.597 kb on - strand, within Dshi_0482at 467.597 kb on - strand, within Dshi_0482at 467.597 kb on - strand, within Dshi_0482at 467.603 kb on + strand, within Dshi_0482at 467.634 kb on - strand, within Dshi_0482at 467.636 kb on + strand, within Dshi_0482at 467.659 kb on - strand, within Dshi_0482at 467.661 kb on + strand, within Dshi_0482at 467.670 kb on - strand, within Dshi_0482at 467.704 kb on + strand, within Dshi_0482at 467.704 kb on + strand, within Dshi_0482at 467.709 kb on + strand, within Dshi_0482at 467.711 kb on - strand, within Dshi_0482at 467.711 kb on - strand, within Dshi_0482at 467.717 kb on - strand, within Dshi_0482at 467.723 kb on + strand, within Dshi_0482at 467.723 kb on + strand, within Dshi_0482at 467.750 kb on + strandat 467.758 kb on - strandat 467.758 kb on - strandat 467.820 kb on - strandat 467.835 kb on - strandat 467.835 kb on - strandat 467.835 kb on - strandat 467.835 kb on - strandat 467.850 kb on + strandat 467.858 kb on - strandat 467.864 kb on + strandat 467.864 kb on + strandat 467.872 kb on - strandat 467.875 kb on + strandat 467.891 kb on - strandat 467.931 kb on + strandat 467.939 kb on - strandat 467.939 kb on - strandat 467.984 kb on + strandat 467.984 kb on + strandat 468.030 kb on + strandat 468.064 kb on - strand, within Dshi_0483at 468.077 kb on + strand, within Dshi_0483at 468.090 kb on + strand, within Dshi_0483at 468.098 kb on - strand, within Dshi_0483at 468.098 kb on - strand, within Dshi_0483at 468.165 kb on - strand, within Dshi_0483at 468.201 kb on + strand, within Dshi_0483at 468.202 kb on - strand, within Dshi_0483at 468.232 kb on - strand, within Dshi_0483at 468.307 kb on - strand, within Dshi_0483at 468.327 kb on + strand, within Dshi_0483at 468.351 kb on + strand, within Dshi_0483at 468.371 kb on + strand, within Dshi_0483at 468.381 kb on + strand, within Dshi_0483at 468.381 kb on + strand, within Dshi_0483at 468.389 kb on - strand, within Dshi_0483at 468.389 kb on - strand, within Dshi_0483at 468.494 kb on + strand, within Dshi_0483at 468.525 kb on - strand, within Dshi_0483at 468.549 kb on + strand, within Dshi_0483at 468.598 kb on - strand, within Dshi_0483at 468.598 kb on - strand, within Dshi_0483at 468.619 kb on - strand, within Dshi_0483at 468.663 kb on - strand, within Dshi_0483at 468.668 kb on - strand, within Dshi_0483at 468.676 kb on - strand, within Dshi_0483at 468.698 kb on + strand, within Dshi_0483at 468.699 kb on - strand, within Dshi_0483at 468.699 kb on - strand, within Dshi_0483at 468.706 kb on - strand, within Dshi_0483at 468.741 kb on - strand, within Dshi_0483at 468.755 kb on - strand, within Dshi_0483at 468.757 kb on - strand, within Dshi_0483at 468.761 kb on + strand, within Dshi_0483at 468.762 kb on + strand, within Dshi_0483at 468.768 kb on + strand, within Dshi_0483at 468.770 kb on - strand, within Dshi_0483at 468.770 kb on - strand, within Dshi_0483at 468.778 kb on - strand, within Dshi_0483

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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466,331 + Dshi_0481 0.38 -0.2
466,334 - Dshi_0481 0.39 +0.1
466,351 - Dshi_0481 0.41 +1.3
466,433 - Dshi_0481 0.51 +0.2
466,486 - Dshi_0481 0.57 -1.2
466,583 - Dshi_0481 0.69 -0.7
466,583 - Dshi_0481 0.69 +0.2
466,583 - Dshi_0481 0.69 -0.6
466,637 + Dshi_0481 0.76 -2.0
466,637 + Dshi_0481 0.76 -0.6
466,674 - Dshi_0481 0.81 +0.8
466,702 + Dshi_0481 0.84 +1.1
466,702 + Dshi_0481 0.84 +0.8
466,703 - Dshi_0481 0.84 +0.1
466,710 - Dshi_0481 0.85 -0.7
466,710 - Dshi_0481 0.85 -0.4
466,731 + Dshi_0481 0.88 +0.0
466,743 + Dshi_0481 0.89 -0.9
466,743 + Dshi_0481 0.89 -2.5
466,743 + Dshi_0481 0.89 -1.0
466,743 + Dshi_0481 0.89 +0.2
466,743 + Dshi_0481 0.89 +0.7
466,743 + Dshi_0481 0.89 +0.2
466,743 + Dshi_0481 0.89 -0.3
466,743 + Dshi_0481 0.89 -0.6
466,743 + Dshi_0481 0.89 -0.4
466,743 + Dshi_0481 0.89 +0.9
466,751 - -1.4
466,751 - -0.3
466,751 - -1.0
466,751 - -0.4
466,763 - -0.1
466,763 - +0.1
466,786 + +0.2
466,799 - +0.5
466,799 - -0.3
466,819 - +0.2
466,854 + -0.7
466,856 + +0.0
466,864 - -0.1
466,891 + -0.6
466,894 - -0.0
466,963 + +0.7
466,963 + -0.3
466,963 + -2.9
466,963 + -0.2
466,971 - -0.3
466,971 - +0.0
466,971 - +0.1
466,986 + +0.1
467,017 + +0.5
467,025 - -1.4
467,025 - -2.0
467,045 + -1.4
467,059 + +1.4
467,159 + -0.7
467,169 + -0.8
467,169 + +0.9
467,169 + -1.0
467,169 + -0.0
467,169 + -0.3
467,177 - +0.8
467,177 - -1.0
467,211 - +0.8
467,217 - +0.7
467,252 + +0.1
467,252 + -2.6
467,253 + -3.1
467,253 + -2.1
467,271 + -0.4
467,271 + -0.1
467,286 + +0.5
467,294 - -0.6
467,334 - -1.1
467,346 + -0.8
467,351 + Dshi_0482 0.11 -0.4
467,354 - Dshi_0482 0.11 -0.8
467,356 + Dshi_0482 0.12 +0.2
467,356 + Dshi_0482 0.12 +0.4
467,356 + Dshi_0482 0.12 -0.8
467,361 + Dshi_0482 0.13 +0.4
467,364 - Dshi_0482 0.13 -0.6
467,393 + Dshi_0482 0.19 -2.0
467,393 + Dshi_0482 0.19 +0.2
467,393 + Dshi_0482 0.19 +2.3
467,393 + Dshi_0482 0.19 +1.0
467,393 + Dshi_0482 0.19 -0.1
467,401 - Dshi_0482 0.21 -1.1
467,401 - Dshi_0482 0.21 -0.8
467,401 - Dshi_0482 0.21 -1.1
467,401 - Dshi_0482 0.21 +0.6
467,401 - Dshi_0482 0.21 -0.4
467,401 - Dshi_0482 0.21 +0.3
467,403 + Dshi_0482 0.21 -0.8
467,411 - Dshi_0482 0.23 +1.2
467,411 - Dshi_0482 0.23 -0.6
467,427 + Dshi_0482 0.26 +0.3
467,427 + Dshi_0482 0.26 +0.2
467,427 + Dshi_0482 0.26 +1.2
467,435 - Dshi_0482 0.28 +0.4
467,435 - Dshi_0482 0.28 +0.6
467,435 - Dshi_0482 0.28 -1.2
467,452 + Dshi_0482 0.31 -0.6
467,453 - Dshi_0482 0.32 +0.5
467,482 + Dshi_0482 0.38 -0.6
467,482 + Dshi_0482 0.38 -0.0
467,482 + Dshi_0482 0.38 -2.0
467,482 + Dshi_0482 0.38 -1.6
467,490 - Dshi_0482 0.39 +0.4
467,495 + Dshi_0482 0.40 -2.1
467,495 + Dshi_0482 0.40 -0.3
467,500 + Dshi_0482 0.41 +0.1
467,587 - Dshi_0482 0.59 -0.0
467,589 + Dshi_0482 0.60 +0.8
467,589 + Dshi_0482 0.60 -0.4
467,597 + Dshi_0482 0.61 -0.1
467,597 - Dshi_0482 0.61 +1.9
467,597 - Dshi_0482 0.61 +1.1
467,597 - Dshi_0482 0.61 -0.7
467,603 + Dshi_0482 0.63 -0.6
467,634 - Dshi_0482 0.69 -1.0
467,636 + Dshi_0482 0.69 +1.1
467,659 - Dshi_0482 0.74 +0.5
467,661 + Dshi_0482 0.74 +0.9
467,670 - Dshi_0482 0.76 -0.3
467,704 + Dshi_0482 0.83 -3.3
467,704 + Dshi_0482 0.83 +0.3
467,709 + Dshi_0482 0.84 +0.2
467,711 - Dshi_0482 0.85 +0.0
467,711 - Dshi_0482 0.85 -1.0
467,717 - Dshi_0482 0.86 -0.4
467,723 + Dshi_0482 0.87 +0.4
467,723 + Dshi_0482 0.87 +1.2
467,750 + +1.1
467,758 - -0.3
467,758 - -1.8
467,820 - +0.6
467,835 - -1.3
467,835 - +0.5
467,835 - +3.2
467,835 - -0.4
467,850 + -0.6
467,858 - +0.6
467,864 + -0.7
467,864 + +1.6
467,872 - +0.1
467,875 + +0.2
467,891 - +0.2
467,931 + +0.0
467,939 - -0.3
467,939 - +0.9
467,984 + -1.2
467,984 + +0.6
468,030 + -0.1
468,064 - Dshi_0483 0.10 +0.8
468,077 + Dshi_0483 0.11 +1.4
468,090 + Dshi_0483 0.12 +1.3
468,098 - Dshi_0483 0.13 -0.1
468,098 - Dshi_0483 0.13 -0.3
468,165 - Dshi_0483 0.19 +0.0
468,201 + Dshi_0483 0.22 +0.4
468,202 - Dshi_0483 0.22 +0.3
468,232 - Dshi_0483 0.24 +0.9
468,307 - Dshi_0483 0.31 +0.4
468,327 + Dshi_0483 0.32 +0.2
468,351 + Dshi_0483 0.34 -0.1
468,371 + Dshi_0483 0.36 -0.3
468,381 + Dshi_0483 0.37 +0.1
468,381 + Dshi_0483 0.37 -0.8
468,389 - Dshi_0483 0.38 +0.2
468,389 - Dshi_0483 0.38 -0.6
468,494 + Dshi_0483 0.46 -0.1
468,525 - Dshi_0483 0.49 -2.9
468,549 + Dshi_0483 0.51 +1.0
468,598 - Dshi_0483 0.55 +0.2
468,598 - Dshi_0483 0.55 +0.1
468,619 - Dshi_0483 0.57 -1.2
468,663 - Dshi_0483 0.61 -2.5
468,668 - Dshi_0483 0.61 +1.4
468,676 - Dshi_0483 0.62 -0.0
468,698 + Dshi_0483 0.64 +0.0
468,699 - Dshi_0483 0.64 -0.8
468,699 - Dshi_0483 0.64 +0.6
468,706 - Dshi_0483 0.64 -0.5
468,741 - Dshi_0483 0.67 +0.5
468,755 - Dshi_0483 0.68 -0.2
468,757 - Dshi_0483 0.69 -1.2
468,761 + Dshi_0483 0.69 +0.4
468,762 + Dshi_0483 0.69 -0.4
468,768 + Dshi_0483 0.69 -2.5
468,770 - Dshi_0483 0.70 -1.1
468,770 - Dshi_0483 0.70 +0.1
468,778 - Dshi_0483 0.70 +0.6

Or see this region's nucleotide sequence