Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0480

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0478 and Dshi_0479 overlap by 4 nucleotidesDshi_0479 and Dshi_0480 are separated by 134 nucleotidesDshi_0480 and Dshi_0481 are separated by 51 nucleotides Dshi_0478: Dshi_0478 - extracellular solute-binding protein family 3 (RefSeq), at 463,273 to 464,121 _0478 Dshi_0479: Dshi_0479 - hypothetical protein (RefSeq), at 464,118 to 464,666 _0479 Dshi_0480: Dshi_0480 - hypothetical protein (RefSeq), at 464,801 to 465,967 _0480 Dshi_0481: Dshi_0481 - hypothetical protein (RefSeq), at 466,019 to 466,831 _0481 Position (kb) 464 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 463.802 kb on + strand, within Dshi_0478at 463.831 kb on + strand, within Dshi_0478at 463.856 kb on - strand, within Dshi_0478at 463.919 kb on - strand, within Dshi_0478at 463.920 kb on + strand, within Dshi_0478at 463.936 kb on - strand, within Dshi_0478at 463.937 kb on + strand, within Dshi_0478at 463.941 kb on - strand, within Dshi_0478at 463.970 kb on + strand, within Dshi_0478at 463.978 kb on - strand, within Dshi_0478at 463.978 kb on - strand, within Dshi_0478at 463.996 kb on - strand, within Dshi_0478at 464.076 kb on + strandat 464.077 kb on - strandat 464.172 kb on - strandat 464.219 kb on + strand, within Dshi_0479at 464.224 kb on + strand, within Dshi_0479at 464.230 kb on + strand, within Dshi_0479at 464.230 kb on + strand, within Dshi_0479at 464.236 kb on + strand, within Dshi_0479at 464.247 kb on + strand, within Dshi_0479at 464.255 kb on + strandat 464.265 kb on + strand, within Dshi_0479at 464.319 kb on + strand, within Dshi_0479at 464.352 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.374 kb on + strand, within Dshi_0479at 464.408 kb on + strand, within Dshi_0479at 464.413 kb on + strand, within Dshi_0479at 464.465 kb on + strand, within Dshi_0479at 464.524 kb on - strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.558 kb on + strand, within Dshi_0479at 464.558 kb on + strand, within Dshi_0479at 464.558 kb on + strandat 464.558 kb on + strand, within Dshi_0479at 464.566 kb on - strand, within Dshi_0479at 464.566 kb on - strand, within Dshi_0479at 464.583 kb on + strand, within Dshi_0479at 464.596 kb on - strand, within Dshi_0479at 464.598 kb on + strand, within Dshi_0479at 464.635 kb on + strandat 464.635 kb on + strandat 464.643 kb on - strandat 464.765 kb on - strandat 464.876 kb on + strandat 464.903 kb on - strandat 464.908 kb on - strandat 464.917 kb on + strandat 464.969 kb on + strand, within Dshi_0480at 464.977 kb on - strand, within Dshi_0480at 465.009 kb on - strand, within Dshi_0480at 465.012 kb on + strand, within Dshi_0480at 465.024 kb on - strand, within Dshi_0480at 465.034 kb on + strand, within Dshi_0480at 465.042 kb on + strand, within Dshi_0480at 465.070 kb on - strand, within Dshi_0480at 465.082 kb on + strand, within Dshi_0480at 465.099 kb on - strand, within Dshi_0480at 465.100 kb on - strand, within Dshi_0480at 465.123 kb on - strand, within Dshi_0480at 465.194 kb on + strand, within Dshi_0480at 465.195 kb on + strand, within Dshi_0480at 465.217 kb on + strand, within Dshi_0480at 465.217 kb on + strand, within Dshi_0480at 465.253 kb on - strand, within Dshi_0480at 465.265 kb on + strand, within Dshi_0480at 465.272 kb on - strand, within Dshi_0480at 465.276 kb on + strand, within Dshi_0480at 465.341 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.416 kb on - strand, within Dshi_0480at 465.416 kb on - strand, within Dshi_0480at 465.484 kb on + strand, within Dshi_0480at 465.509 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.521 kb on - strand, within Dshi_0480at 465.524 kb on + strand, within Dshi_0480at 465.524 kb on + strand, within Dshi_0480at 465.527 kb on - strand, within Dshi_0480at 465.527 kb on - strand, within Dshi_0480at 465.536 kb on + strand, within Dshi_0480at 465.601 kb on + strand, within Dshi_0480at 465.623 kb on - strand, within Dshi_0480at 465.699 kb on + strand, within Dshi_0480at 465.716 kb on + strand, within Dshi_0480at 465.773 kb on + strand, within Dshi_0480at 465.833 kb on - strand, within Dshi_0480at 465.843 kb on - strand, within Dshi_0480at 465.856 kb on + strandat 465.856 kb on + strandat 465.857 kb on - strandat 465.861 kb on + strandat 465.861 kb on + strandat 465.861 kb on + strandat 465.862 kb on - strandat 465.864 kb on - strandat 465.869 kb on - strandat 465.869 kb on - strandat 465.875 kb on + strandat 465.880 kb on + strandat 465.882 kb on + strandat 465.900 kb on + strandat 465.910 kb on + strandat 465.943 kb on + strandat 465.951 kb on - strandat 465.983 kb on + strandat 465.983 kb on + strandat 466.010 kb on + strandat 466.012 kb on + strandat 466.020 kb on - strandat 466.077 kb on - strandat 466.090 kb on + strandat 466.090 kb on + strandat 466.098 kb on - strandat 466.098 kb on - strandat 466.237 kb on - strand, within Dshi_0481at 466.241 kb on + strand, within Dshi_0481at 466.241 kb on + strand, within Dshi_0481at 466.246 kb on - strand, within Dshi_0481at 466.246 kb on - strand, within Dshi_0481at 466.246 kb on - strand, within Dshi_0481at 466.261 kb on + strand, within Dshi_0481at 466.264 kb on - strand, within Dshi_0481at 466.297 kb on + strand, within Dshi_0481at 466.297 kb on + strand, within Dshi_0481at 466.331 kb on + strand, within Dshi_0481at 466.334 kb on - strand, within Dshi_0481at 466.351 kb on - strand, within Dshi_0481at 466.433 kb on - strand, within Dshi_0481at 466.486 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.583 kb on - strand, within Dshi_0481at 466.637 kb on + strand, within Dshi_0481at 466.637 kb on + strand, within Dshi_0481at 466.674 kb on - strand, within Dshi_0481at 466.702 kb on + strand, within Dshi_0481at 466.702 kb on + strand, within Dshi_0481at 466.703 kb on - strand, within Dshi_0481at 466.710 kb on - strand, within Dshi_0481at 466.710 kb on - strand, within Dshi_0481at 466.731 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.743 kb on + strand, within Dshi_0481at 466.751 kb on - strandat 466.751 kb on - strandat 466.751 kb on - strandat 466.751 kb on - strandat 466.763 kb on - strandat 466.763 kb on - strandat 466.786 kb on + strandat 466.799 kb on - strandat 466.799 kb on - strandat 466.819 kb on - strandat 466.854 kb on + strandat 466.856 kb on + strandat 466.864 kb on - strandat 466.891 kb on + strandat 466.894 kb on - strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.963 kb on + strandat 466.963 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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463,802 + Dshi_0478 0.62 -1.9
463,831 + Dshi_0478 0.66 +0.2
463,856 - Dshi_0478 0.69 +0.0
463,919 - Dshi_0478 0.76 -0.1
463,920 + Dshi_0478 0.76 -1.9
463,936 - Dshi_0478 0.78 +1.0
463,937 + Dshi_0478 0.78 -0.1
463,941 - Dshi_0478 0.79 +0.2
463,970 + Dshi_0478 0.82 -0.9
463,978 - Dshi_0478 0.83 -0.7
463,978 - Dshi_0478 0.83 -3.6
463,996 - Dshi_0478 0.85 +0.3
464,076 + +1.5
464,077 - -0.8
464,172 - +1.2
464,219 + Dshi_0479 0.18 -0.8
464,224 + Dshi_0479 0.19 -0.6
464,230 + Dshi_0479 0.20 -1.3
464,230 + Dshi_0479 0.20 -1.1
464,236 + Dshi_0479 0.21 +1.1
464,247 + Dshi_0479 0.23 +0.1
464,255 + +1.2
464,265 + Dshi_0479 0.27 -0.8
464,319 + Dshi_0479 0.37 -0.6
464,352 - Dshi_0479 0.43 -2.6
464,353 - Dshi_0479 0.43 -0.8
464,353 - Dshi_0479 0.43 -0.0
464,353 - Dshi_0479 0.43 +0.3
464,353 - Dshi_0479 0.43 -1.9
464,353 - Dshi_0479 0.43 -0.8
464,353 - Dshi_0479 0.43 -0.5
464,374 + Dshi_0479 0.47 +1.1
464,408 + Dshi_0479 0.53 +0.1
464,413 + Dshi_0479 0.54 -0.4
464,465 + Dshi_0479 0.63 +0.2
464,524 - Dshi_0479 0.74 +1.1
464,552 + Dshi_0479 0.79 -0.6
464,552 + Dshi_0479 0.79 -0.3
464,552 + Dshi_0479 0.79 +0.7
464,552 + Dshi_0479 0.79 +0.3
464,558 + Dshi_0479 0.80 -0.7
464,558 + Dshi_0479 0.80 +0.2
464,558 + +0.9
464,558 + Dshi_0479 0.80 +0.1
464,566 - Dshi_0479 0.82 -0.5
464,566 - Dshi_0479 0.82 -2.3
464,583 + Dshi_0479 0.85 -0.8
464,596 - Dshi_0479 0.87 -0.8
464,598 + Dshi_0479 0.87 -0.0
464,635 + -1.4
464,635 + -0.2
464,643 - -0.4
464,765 - -2.9
464,876 + -3.2
464,903 - +0.2
464,908 - +0.2
464,917 + +0.1
464,969 + Dshi_0480 0.14 -0.3
464,977 - Dshi_0480 0.15 -0.7
465,009 - Dshi_0480 0.18 +0.8
465,012 + Dshi_0480 0.18 -1.6
465,024 - Dshi_0480 0.19 +1.1
465,034 + Dshi_0480 0.20 +0.1
465,042 + Dshi_0480 0.21 +0.4
465,070 - Dshi_0480 0.23 +0.9
465,082 + Dshi_0480 0.24 -0.5
465,099 - Dshi_0480 0.26 -0.1
465,100 - Dshi_0480 0.26 +0.2
465,123 - Dshi_0480 0.28 +0.9
465,194 + Dshi_0480 0.34 +0.5
465,195 + Dshi_0480 0.34 -0.4
465,217 + Dshi_0480 0.36 +0.2
465,217 + Dshi_0480 0.36 -0.1
465,253 - Dshi_0480 0.39 +1.3
465,265 + Dshi_0480 0.40 -1.9
465,272 - Dshi_0480 0.40 +1.8
465,276 + Dshi_0480 0.41 -0.4
465,341 + Dshi_0480 0.46 +0.0
465,376 + Dshi_0480 0.49 -0.3
465,376 + Dshi_0480 0.49 +0.4
465,376 + Dshi_0480 0.49 +0.2
465,416 - Dshi_0480 0.53 -0.3
465,416 - Dshi_0480 0.53 +0.7
465,484 + Dshi_0480 0.59 -0.9
465,509 + Dshi_0480 0.61 -0.7
465,519 + Dshi_0480 0.62 +1.4
465,519 + Dshi_0480 0.62 +1.3
465,519 + Dshi_0480 0.62 +1.5
465,519 + Dshi_0480 0.62 +1.2
465,521 - Dshi_0480 0.62 -0.2
465,524 + Dshi_0480 0.62 -0.3
465,524 + Dshi_0480 0.62 +1.4
465,527 - Dshi_0480 0.62 +0.3
465,527 - Dshi_0480 0.62 +0.7
465,536 + Dshi_0480 0.63 -0.4
465,601 + Dshi_0480 0.69 -1.5
465,623 - Dshi_0480 0.70 -1.8
465,699 + Dshi_0480 0.77 -0.1
465,716 + Dshi_0480 0.78 -2.9
465,773 + Dshi_0480 0.83 -1.7
465,833 - Dshi_0480 0.88 +0.1
465,843 - Dshi_0480 0.89 -1.9
465,856 + -0.5
465,856 + +1.3
465,857 - -0.3
465,861 + -0.7
465,861 + +0.6
465,861 + -0.4
465,862 - -0.4
465,864 - -0.7
465,869 - +0.7
465,869 - -0.3
465,875 + -0.2
465,880 + -0.5
465,882 + +1.8
465,900 + +0.6
465,910 + -0.6
465,943 + -0.5
465,951 - +1.2
465,983 + -0.6
465,983 + -0.0
466,010 + -0.0
466,012 + -0.4
466,020 - +2.7
466,077 - +0.2
466,090 + +0.6
466,090 + -0.1
466,098 - -3.6
466,098 - +0.7
466,237 - Dshi_0481 0.27 -0.4
466,241 + Dshi_0481 0.27 -0.2
466,241 + Dshi_0481 0.27 +1.5
466,246 - Dshi_0481 0.28 -1.9
466,246 - Dshi_0481 0.28 -0.4
466,246 - Dshi_0481 0.28 -1.7
466,261 + Dshi_0481 0.30 -1.1
466,264 - Dshi_0481 0.30 -0.2
466,297 + Dshi_0481 0.34 +0.2
466,297 + Dshi_0481 0.34 +0.7
466,331 + Dshi_0481 0.38 -0.2
466,334 - Dshi_0481 0.39 +0.1
466,351 - Dshi_0481 0.41 +1.3
466,433 - Dshi_0481 0.51 +0.2
466,486 - Dshi_0481 0.57 -1.2
466,583 - Dshi_0481 0.69 -0.7
466,583 - Dshi_0481 0.69 +0.2
466,583 - Dshi_0481 0.69 -0.6
466,637 + Dshi_0481 0.76 -2.0
466,637 + Dshi_0481 0.76 -0.6
466,674 - Dshi_0481 0.81 +0.8
466,702 + Dshi_0481 0.84 +1.1
466,702 + Dshi_0481 0.84 +0.8
466,703 - Dshi_0481 0.84 +0.1
466,710 - Dshi_0481 0.85 -0.7
466,710 - Dshi_0481 0.85 -0.4
466,731 + Dshi_0481 0.88 +0.0
466,743 + Dshi_0481 0.89 -0.9
466,743 + Dshi_0481 0.89 -2.5
466,743 + Dshi_0481 0.89 -1.0
466,743 + Dshi_0481 0.89 +0.2
466,743 + Dshi_0481 0.89 +0.7
466,743 + Dshi_0481 0.89 +0.2
466,743 + Dshi_0481 0.89 -0.3
466,743 + Dshi_0481 0.89 -0.6
466,743 + Dshi_0481 0.89 -0.4
466,743 + Dshi_0481 0.89 +0.9
466,751 - -1.4
466,751 - -0.3
466,751 - -1.0
466,751 - -0.4
466,763 - -0.1
466,763 - +0.1
466,786 + +0.2
466,799 - +0.5
466,799 - -0.3
466,819 - +0.2
466,854 + -0.7
466,856 + +0.0
466,864 - -0.1
466,891 + -0.6
466,894 - -0.0
466,963 + +0.7
466,963 + -0.3
466,963 + -2.9
466,963 + -0.2

Or see this region's nucleotide sequence