Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0440 and Dshi_0441 are separated by 4 nucleotides Dshi_0441 and Dshi_0442 overlap by 11 nucleotides Dshi_0442 and Dshi_0443 overlap by 17 nucleotides Dshi_0443 and Dshi_0444 are separated by 37 nucleotides
Dshi_0440: Dshi_0440 - ATP synthase F0, C subunit (RefSeq), at 430,175 to 430,465
_0440
Dshi_0441: Dshi_0441 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 430,470 to 431,237
_0441
Dshi_0442: Dshi_0442 - ATP synthase F1, alpha subunit (RefSeq), at 431,227 to 432,756
_0442
Dshi_0443: Dshi_0443 - H+transporting two-sector ATPase gamma subunit (RefSeq), at 432,740 to 433,687
_0443
Dshi_0444: Dshi_0444 - hypothetical protein (RefSeq), at 433,725 to 434,012
_0444
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 430.228 kb on - strand, within Dshi_0440 at 430.256 kb on - strand, within Dshi_0440 at 430.358 kb on + strand, within Dshi_0440 at 430.460 kb on + strand at 430.460 kb on + strand at 430.468 kb on - strand at 430.483 kb on + strand at 430.552 kb on + strand, within Dshi_0441 at 430.560 kb on - strand, within Dshi_0441 at 430.573 kb on + strand, within Dshi_0441 at 430.610 kb on + strand, within Dshi_0441 at 430.668 kb on + strand, within Dshi_0441 at 430.673 kb on + strand, within Dshi_0441 at 431.089 kb on - strand, within Dshi_0441 at 431.110 kb on - strand, within Dshi_0441 at 431.143 kb on + strand, within Dshi_0441 at 431.159 kb on - strand, within Dshi_0441 at 431.190 kb on - strand at 431.230 kb on + strand at 431.300 kb on + strand at 431.495 kb on - strand, within Dshi_0442 at 431.591 kb on + strand, within Dshi_0442 at 431.623 kb on - strand, within Dshi_0442 at 431.681 kb on + strand, within Dshi_0442 at 431.689 kb on - strand, within Dshi_0442 at 431.694 kb on + strand, within Dshi_0442 at 431.699 kb on + strand, within Dshi_0442 at 431.708 kb on + strand, within Dshi_0442 at 431.722 kb on - strand, within Dshi_0442 at 431.927 kb on + strand, within Dshi_0442 at 431.927 kb on + strand, within Dshi_0442 at 431.945 kb on - strand, within Dshi_0442 at 431.962 kb on - strand, within Dshi_0442 at 431.971 kb on + strand, within Dshi_0442 at 432.039 kb on + strand, within Dshi_0442 at 432.247 kb on + strand, within Dshi_0442 at 432.250 kb on - strand, within Dshi_0442 at 432.252 kb on + strand, within Dshi_0442 at 432.260 kb on - strand, within Dshi_0442 at 432.271 kb on - strand, within Dshi_0442 at 432.361 kb on + strand, within Dshi_0442 at 432.361 kb on + strand, within Dshi_0442 at 432.369 kb on - strand, within Dshi_0442 at 432.465 kb on + strand, within Dshi_0442 at 432.489 kb on + strand, within Dshi_0442 at 432.551 kb on + strand, within Dshi_0442 at 432.626 kb on + strand at 432.689 kb on + strand at 432.758 kb on - strand at 432.801 kb on - strand at 433.113 kb on - strand, within Dshi_0443 at 433.193 kb on + strand, within Dshi_0443 at 433.331 kb on + strand, within Dshi_0443 at 433.368 kb on + strand, within Dshi_0443 at 433.384 kb on + strand, within Dshi_0443 at 433.476 kb on + strand, within Dshi_0443 at 433.522 kb on + strand, within Dshi_0443 at 433.558 kb on + strand, within Dshi_0443 at 433.600 kb on + strand at 433.625 kb on + strand at 433.652 kb on + strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 430,228 - Dshi_0440 0.18 +1.4 430,256 - Dshi_0440 0.28 +1.0 430,358 + Dshi_0440 0.63 +1.0 430,460 + +1.4 430,460 + -1.0 430,468 - -0.0 430,483 + +0.6 430,552 + Dshi_0441 0.11 -0.5 430,560 - Dshi_0441 0.12 -0.6 430,573 + Dshi_0441 0.13 +1.4 430,610 + Dshi_0441 0.18 +1.4 430,668 + Dshi_0441 0.26 -0.6 430,673 + Dshi_0441 0.26 -2.0 431,089 - Dshi_0441 0.81 +0.8 431,110 - Dshi_0441 0.83 +3.7 431,143 + Dshi_0441 0.88 -1.4 431,159 - Dshi_0441 0.90 -1.9 431,190 - -0.9 431,230 + -1.1 431,300 + +0.0 431,495 - Dshi_0442 0.18 -1.4 431,591 + Dshi_0442 0.24 -0.8 431,623 - Dshi_0442 0.26 +0.5 431,681 + Dshi_0442 0.30 +0.9 431,689 - Dshi_0442 0.30 +0.8 431,694 + Dshi_0442 0.31 -0.4 431,699 + Dshi_0442 0.31 -1.5 431,708 + Dshi_0442 0.31 -1.5 431,722 - Dshi_0442 0.32 -1.0 431,927 + Dshi_0442 0.46 +1.5 431,927 + Dshi_0442 0.46 -1.4 431,945 - Dshi_0442 0.47 -1.6 431,962 - Dshi_0442 0.48 +1.4 431,971 + Dshi_0442 0.49 -0.2 432,039 + Dshi_0442 0.53 +2.0 432,247 + Dshi_0442 0.67 -0.5 432,250 - Dshi_0442 0.67 +2.7 432,252 + Dshi_0442 0.67 +1.2 432,260 - Dshi_0442 0.68 +0.1 432,271 - Dshi_0442 0.68 +1.2 432,361 + Dshi_0442 0.74 +1.4 432,361 + Dshi_0442 0.74 -1.8 432,369 - Dshi_0442 0.75 +1.4 432,465 + Dshi_0442 0.81 +0.7 432,489 + Dshi_0442 0.82 +2.1 432,551 + Dshi_0442 0.87 -2.2 432,626 + +1.5 432,689 + -0.2 432,758 - +2.4 432,801 - +1.4 433,113 - Dshi_0443 0.39 -0.3 433,193 + Dshi_0443 0.48 +0.8 433,331 + Dshi_0443 0.62 +1.1 433,368 + Dshi_0443 0.66 +0.3 433,384 + Dshi_0443 0.68 +0.2 433,476 + Dshi_0443 0.78 +0.3 433,522 + Dshi_0443 0.82 +0.0 433,558 + Dshi_0443 0.86 +1.1 433,600 + -1.0 433,625 + -1.2 433,652 + +1.8 433,673 + -1.3 433,673 + -0.2 433,681 - -0.6
Or see this region's nucleotide sequence