Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0380 and Dshi_0381 are separated by 62 nucleotides Dshi_0381 and Dshi_0382 are separated by 156 nucleotides
Dshi_0380: Dshi_0380 - hypothetical protein (RefSeq), at 362,188 to 363,468
_0380
Dshi_0381: Dshi_0381 - ABC transporter related (RefSeq), at 363,531 to 364,355
_0381
Dshi_0382: Dshi_0382 - phenylacetate-CoA ligase, putative (RefSeq), at 364,512 to 365,732
_0382
Position (kb) 363
364
365 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 362.578 kb on + strand, within Dshi_0380 at 362.586 kb on - strand, within Dshi_0380 at 362.590 kb on + strand, within Dshi_0380 at 362.620 kb on - strand, within Dshi_0380 at 362.651 kb on - strand, within Dshi_0380 at 362.670 kb on + strand, within Dshi_0380 at 362.879 kb on - strand, within Dshi_0380 at 362.986 kb on + strand, within Dshi_0380 at 363.093 kb on + strand, within Dshi_0380 at 363.096 kb on - strand, within Dshi_0380 at 363.288 kb on - strand, within Dshi_0380 at 363.306 kb on - strand, within Dshi_0380 at 363.346 kb on + strand at 363.346 kb on + strand at 363.346 kb on + strand at 363.436 kb on + strand at 363.541 kb on - strand at 363.609 kb on + strand at 363.611 kb on + strand at 363.686 kb on - strand, within Dshi_0381 at 363.739 kb on + strand, within Dshi_0381 at 363.811 kb on - strand, within Dshi_0381 at 363.854 kb on - strand, within Dshi_0381 at 363.978 kb on + strand, within Dshi_0381 at 363.986 kb on - strand, within Dshi_0381 at 364.106 kb on - strand, within Dshi_0381 at 364.293 kb on - strand at 364.335 kb on + strand at 364.517 kb on + strand at 364.707 kb on + strand, within Dshi_0382 at 364.797 kb on - strand, within Dshi_0382 at 365.050 kb on + strand, within Dshi_0382 at 365.058 kb on - strand, within Dshi_0382 at 365.080 kb on + strand, within Dshi_0382 at 365.117 kb on + strand, within Dshi_0382 at 365.184 kb on - strand, within Dshi_0382
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 362,578 + Dshi_0380 0.30 +0.8 362,586 - Dshi_0380 0.31 +0.1 362,590 + Dshi_0380 0.31 +1.6 362,620 - Dshi_0380 0.34 +0.9 362,651 - Dshi_0380 0.36 +0.1 362,670 + Dshi_0380 0.38 +0.3 362,879 - Dshi_0380 0.54 +0.4 362,986 + Dshi_0380 0.62 -0.2 363,093 + Dshi_0380 0.71 -0.8 363,096 - Dshi_0380 0.71 -2.3 363,288 - Dshi_0380 0.86 -1.3 363,306 - Dshi_0380 0.87 -0.0 363,346 + +1.0 363,346 + +0.1 363,346 + +1.1 363,436 + -0.4 363,541 - +0.3 363,609 + -1.3 363,611 + -1.5 363,686 - Dshi_0381 0.19 +4.0 363,739 + Dshi_0381 0.25 -0.6 363,811 - Dshi_0381 0.34 -0.3 363,854 - Dshi_0381 0.39 -1.8 363,978 + Dshi_0381 0.54 -2.3 363,986 - Dshi_0381 0.55 -1.1 364,106 - Dshi_0381 0.70 -1.9 364,293 - -1.6 364,335 + -0.0 364,517 + -1.1 364,707 + Dshi_0382 0.16 -0.2 364,797 - Dshi_0382 0.23 -2.6 365,050 + Dshi_0382 0.44 -1.8 365,058 - Dshi_0382 0.45 +2.1 365,080 + Dshi_0382 0.47 +1.6 365,117 + Dshi_0382 0.50 -0.7 365,184 - Dshi_0382 0.55 -2.7
Or see this region's nucleotide sequence