Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0337 and Dshi_0338 are separated by 381 nucleotides Dshi_0338 and Dshi_0339 are separated by 207 nucleotides
Dshi_0337: Dshi_0337 - ATPase MipZ (RefSeq), at 325,428 to 326,237
_0337
Dshi_0338: Dshi_0338 - beta-lactamase domain protein (RefSeq), at 326,619 to 327,452
_0338
Dshi_0339: Dshi_0339 - protein of unknown function DUF849 (RefSeq), at 327,660 to 328,538
_0339
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 325.674 kb on - strand, within Dshi_0337 at 325.795 kb on - strand, within Dshi_0337 at 325.983 kb on - strand, within Dshi_0337 at 326.288 kb on + strand at 326.288 kb on + strand at 326.288 kb on + strand at 326.288 kb on + strand at 326.288 kb on + strand at 326.296 kb on - strand at 326.296 kb on - strand at 326.339 kb on + strand at 326.340 kb on + strand at 326.342 kb on - strand at 326.342 kb on - strand at 326.358 kb on - strand at 326.432 kb on + strand at 326.467 kb on + strand at 326.499 kb on - strand at 326.514 kb on - strand at 326.740 kb on + strand, within Dshi_0338 at 326.910 kb on + strand, within Dshi_0338 at 326.995 kb on - strand, within Dshi_0338 at 327.073 kb on - strand, within Dshi_0338 at 327.118 kb on - strand, within Dshi_0338 at 327.247 kb on + strand, within Dshi_0338 at 327.247 kb on + strand, within Dshi_0338 at 327.268 kb on + strand, within Dshi_0338 at 327.556 kb on - strand at 327.575 kb on + strand at 327.759 kb on + strand, within Dshi_0339 at 327.786 kb on + strand, within Dshi_0339 at 327.786 kb on + strand, within Dshi_0339 at 327.794 kb on - strand, within Dshi_0339 at 327.794 kb on - strand, within Dshi_0339 at 327.834 kb on - strand, within Dshi_0339 at 327.920 kb on + strand, within Dshi_0339 at 328.186 kb on - strand, within Dshi_0339 at 328.187 kb on - strand, within Dshi_0339 at 328.247 kb on + strand at 328.303 kb on - strand, within Dshi_0339 at 328.389 kb on - strand, within Dshi_0339
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 325,674 - Dshi_0337 0.30 +0.2 325,795 - Dshi_0337 0.45 -2.5 325,983 - Dshi_0337 0.69 +4.0 326,288 + -1.8 326,288 + -1.3 326,288 + +1.9 326,288 + +0.9 326,288 + -2.3 326,296 - +0.9 326,296 - -1.0 326,339 + -1.8 326,340 + +2.4 326,342 - +0.3 326,342 - -0.9 326,358 - -1.5 326,432 + +0.2 326,467 + -2.7 326,499 - +0.9 326,514 - -2.5 326,740 + Dshi_0338 0.15 +2.5 326,910 + Dshi_0338 0.35 +0.2 326,995 - Dshi_0338 0.45 -1.5 327,073 - Dshi_0338 0.54 +0.4 327,118 - Dshi_0338 0.60 -1.9 327,247 + Dshi_0338 0.75 -1.1 327,247 + Dshi_0338 0.75 -1.1 327,268 + Dshi_0338 0.78 -1.3 327,556 - +1.6 327,575 + +1.9 327,759 + Dshi_0339 0.11 +0.9 327,786 + Dshi_0339 0.14 -2.6 327,786 + Dshi_0339 0.14 -2.5 327,794 - Dshi_0339 0.15 +0.4 327,794 - Dshi_0339 0.15 -0.5 327,834 - Dshi_0339 0.20 -0.8 327,920 + Dshi_0339 0.30 -0.8 328,186 - Dshi_0339 0.60 -3.0 328,187 - Dshi_0339 0.60 -1.8 328,247 + +2.4 328,303 - Dshi_0339 0.73 +3.4 328,389 - Dshi_0339 0.83 -1.4
Or see this region's nucleotide sequence