Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0510 and Dshi_0511 are separated by 27 nucleotides Dshi_0511 and Dshi_0512 are separated by 11 nucleotides
Dshi_0510: Dshi_0510 - conserved hypothetical beta-lactamase (RefSeq), at 495,589 to 496,662
_0510
Dshi_0511: Dshi_0511 - hypothetical protein (RefSeq), at 496,690 to 496,893
_0511
Dshi_0512: Dshi_0512 - beta-lactamase domain protein (RefSeq), at 496,905 to 497,582
_0512
Position (kb) 496
497 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 495.701 kb on + strand, within Dshi_0510 at 495.722 kb on - strand, within Dshi_0510 at 495.722 kb on - strand, within Dshi_0510 at 495.722 kb on - strand, within Dshi_0510 at 495.881 kb on - strand, within Dshi_0510 at 495.935 kb on - strand, within Dshi_0510 at 496.038 kb on - strand, within Dshi_0510 at 496.043 kb on - strand, within Dshi_0510 at 496.047 kb on - strand, within Dshi_0510 at 496.106 kb on - strand, within Dshi_0510 at 496.110 kb on + strand, within Dshi_0510 at 496.118 kb on - strand, within Dshi_0510 at 496.151 kb on - strand, within Dshi_0510 at 496.151 kb on - strand, within Dshi_0510 at 496.202 kb on + strand, within Dshi_0510 at 496.223 kb on + strand, within Dshi_0510 at 496.231 kb on - strand, within Dshi_0510 at 496.235 kb on - strand, within Dshi_0510 at 496.242 kb on - strand, within Dshi_0510 at 496.336 kb on - strand, within Dshi_0510 at 496.370 kb on - strand, within Dshi_0510 at 496.422 kb on + strand, within Dshi_0510 at 496.431 kb on + strand, within Dshi_0510 at 496.437 kb on + strand, within Dshi_0510 at 496.439 kb on - strand, within Dshi_0510 at 496.470 kb on - strand, within Dshi_0510 at 496.485 kb on + strand, within Dshi_0510 at 496.539 kb on + strand, within Dshi_0510 at 496.566 kb on + strand at 496.634 kb on + strand at 496.693 kb on + strand at 496.722 kb on + strand, within Dshi_0511 at 496.735 kb on + strand, within Dshi_0511 at 496.784 kb on - strand, within Dshi_0511 at 496.853 kb on + strand, within Dshi_0511 at 496.878 kb on + strand at 496.929 kb on - strand at 496.936 kb on + strand at 496.944 kb on - strand at 496.964 kb on - strand at 497.031 kb on - strand, within Dshi_0512 at 497.084 kb on + strand, within Dshi_0512 at 497.092 kb on - strand, within Dshi_0512 at 497.097 kb on - strand, within Dshi_0512 at 497.125 kb on + strand, within Dshi_0512 at 497.133 kb on - strand, within Dshi_0512 at 497.133 kb on - strand, within Dshi_0512 at 497.133 kb on - strand, within Dshi_0512 at 497.133 kb on - strand, within Dshi_0512 at 497.186 kb on + strand, within Dshi_0512 at 497.186 kb on + strand, within Dshi_0512 at 497.191 kb on + strand, within Dshi_0512 at 497.201 kb on + strand, within Dshi_0512 at 497.233 kb on - strand, within Dshi_0512 at 497.274 kb on - strand, within Dshi_0512 at 497.291 kb on + strand, within Dshi_0512 at 497.299 kb on - strand, within Dshi_0512 at 497.326 kb on + strand, within Dshi_0512 at 497.378 kb on + strand, within Dshi_0512 at 497.489 kb on + strand, within Dshi_0512 at 497.497 kb on - strand, within Dshi_0512 at 497.497 kb on - strand, within Dshi_0512 at 497.529 kb on + strand at 497.545 kb on - strand at 497.711 kb on - strand at 497.743 kb on - strand at 497.796 kb on + strand at 497.805 kb on + strand at 497.805 kb on + strand at 497.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 495,701 + Dshi_0510 0.10 -0.8 495,722 - Dshi_0510 0.12 +0.6 495,722 - Dshi_0510 0.12 -0.7 495,722 - Dshi_0510 0.12 -1.2 495,881 - Dshi_0510 0.27 -0.2 495,935 - Dshi_0510 0.32 -0.5 496,038 - Dshi_0510 0.42 -1.1 496,043 - Dshi_0510 0.42 -0.3 496,047 - Dshi_0510 0.43 +0.2 496,106 - Dshi_0510 0.48 +0.3 496,110 + Dshi_0510 0.49 +0.3 496,118 - Dshi_0510 0.49 -0.9 496,151 - Dshi_0510 0.52 +0.9 496,151 - Dshi_0510 0.52 -0.2 496,202 + Dshi_0510 0.57 -1.8 496,223 + Dshi_0510 0.59 -0.1 496,231 - Dshi_0510 0.60 -0.5 496,235 - Dshi_0510 0.60 -2.5 496,242 - Dshi_0510 0.61 -0.5 496,336 - Dshi_0510 0.70 -0.5 496,370 - Dshi_0510 0.73 -1.3 496,422 + Dshi_0510 0.78 +1.3 496,431 + Dshi_0510 0.78 -0.3 496,437 + Dshi_0510 0.79 +0.0 496,439 - Dshi_0510 0.79 +0.1 496,470 - Dshi_0510 0.82 -2.4 496,485 + Dshi_0510 0.83 +0.7 496,539 + Dshi_0510 0.88 -1.2 496,566 + -0.3 496,634 + +0.9 496,693 + +0.9 496,722 + Dshi_0511 0.16 -1.6 496,735 + Dshi_0511 0.22 -0.8 496,784 - Dshi_0511 0.46 -1.4 496,853 + Dshi_0511 0.80 -5.1 496,878 + +1.9 496,929 - +0.2 496,936 + -0.8 496,944 - -0.2 496,964 - -0.2 497,031 - Dshi_0512 0.19 -0.1 497,084 + Dshi_0512 0.26 +0.2 497,092 - Dshi_0512 0.28 +0.6 497,097 - Dshi_0512 0.28 -0.2 497,125 + Dshi_0512 0.32 -1.4 497,133 - Dshi_0512 0.34 -1.4 497,133 - Dshi_0512 0.34 -0.5 497,133 - Dshi_0512 0.34 +0.3 497,133 - Dshi_0512 0.34 -0.7 497,186 + Dshi_0512 0.41 +0.2 497,186 + Dshi_0512 0.41 -0.2 497,191 + Dshi_0512 0.42 +1.1 497,201 + Dshi_0512 0.44 -0.4 497,233 - Dshi_0512 0.48 -0.4 497,274 - Dshi_0512 0.54 -0.4 497,291 + Dshi_0512 0.57 -0.1 497,299 - Dshi_0512 0.58 -1.6 497,326 + Dshi_0512 0.62 +1.1 497,378 + Dshi_0512 0.70 -1.6 497,489 + Dshi_0512 0.86 +0.5 497,497 - Dshi_0512 0.87 +0.1 497,497 - Dshi_0512 0.87 -0.9 497,529 + +0.0 497,545 - +0.0 497,711 - -0.2 497,743 - -1.1 497,796 + -1.0 497,805 + +0.9 497,805 + -1.2 497,874 - -0.7
Or see this region's nucleotide sequence