Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4159

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4157 and Dshi_4158 are separated by 78 nucleotidesDshi_4158 and Dshi_4159 are separated by 121 nucleotidesDshi_4159 and Dshi_4160 are separated by 54 nucleotides Dshi_4157: Dshi_4157 - monooxygenase protein, putative (RefSeq), at 3,833 to 5,632 _4157 Dshi_4158: Dshi_4158 - acetoin reductase (RefSeq), at 5,711 to 6,484 _4158 Dshi_4159: Dshi_4159 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 6,606 to 7,658 _4159 Dshi_4160: Dshi_4160 - light-dependent protochlorophyllide reductase (RefSeq), at 7,713 to 8,699 _4160 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5.722 kb on + strandat 5.722 kb on + strandat 5.730 kb on - strandat 5.934 kb on + strand, within Dshi_4158at 6.023 kb on + strand, within Dshi_4158at 6.064 kb on - strand, within Dshi_4158at 6.330 kb on - strand, within Dshi_4158at 6.571 kb on - strandat 6.586 kb on + strandat 6.689 kb on + strandat 7.129 kb on + strand, within Dshi_4159at 7.147 kb on - strand, within Dshi_4159at 7.667 kb on - strandat 7.682 kb on - strandat 7.706 kb on + strandat 8.007 kb on + strand, within Dshi_4160at 8.035 kb on + strand, within Dshi_4160at 8.095 kb on - strand, within Dshi_4160at 8.257 kb on + strand, within Dshi_4160at 8.575 kb on - strand, within Dshi_4160at 8.580 kb on - strand, within Dshi_4160at 8.590 kb on - strand, within Dshi_4160at 8.656 kb on - strandat 8.656 kb on - strandat 8.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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5,722 + -0.7
5,722 + -1.2
5,730 - -0.2
5,934 + Dshi_4158 0.29 +0.3
6,023 + Dshi_4158 0.40 +0.6
6,064 - Dshi_4158 0.46 +0.1
6,330 - Dshi_4158 0.80 -0.7
6,571 - +0.2
6,586 + -0.3
6,689 + -0.5
7,129 + Dshi_4159 0.50 +0.3
7,147 - Dshi_4159 0.51 +0.6
7,667 - +0.8
7,682 - -1.4
7,706 + -0.3
8,007 + Dshi_4160 0.30 -0.7
8,035 + Dshi_4160 0.33 -1.9
8,095 - Dshi_4160 0.39 -1.8
8,257 + Dshi_4160 0.55 +0.5
8,575 - Dshi_4160 0.87 -1.0
8,580 - Dshi_4160 0.88 +1.7
8,590 - Dshi_4160 0.89 +2.6
8,656 - +1.3
8,656 - -0.5
8,656 - +3.6

Or see this region's nucleotide sequence