Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4105

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4104 and Dshi_4105 are separated by 134 nucleotidesDshi_4105 and Dshi_4106 are separated by 226 nucleotides Dshi_4104: Dshi_4104 - Cobyrinic acid ac-diamide synthase (RefSeq), at 32,827 to 34,020 _4104 Dshi_4105: Dshi_4105 - Resolvase domain (RefSeq), at 34,155 to 35,036 _4105 Dshi_4106: Dshi_4106 - hypothetical protein (RefSeq), at 35,263 to 36,330 _4106 Position (kb) 34 35 36Strain fitness (log2 ratio) -1 0 1 2at 34.145 kb on + strandat 34.191 kb on + strandat 34.374 kb on - strand, within Dshi_4105at 34.395 kb on + strand, within Dshi_4105at 34.524 kb on - strand, within Dshi_4105at 34.650 kb on + strand, within Dshi_4105at 35.116 kb on - strandat 35.156 kb on + strandat 35.184 kb on + strandat 35.192 kb on - strandat 35.423 kb on + strand, within Dshi_4106at 35.528 kb on + strand, within Dshi_4106at 35.530 kb on + strand, within Dshi_4106at 35.559 kb on + strand, within Dshi_4106at 35.611 kb on - strand, within Dshi_4106at 35.763 kb on - strand, within Dshi_4106at 35.765 kb on + strand, within Dshi_4106at 35.838 kb on - strand, within Dshi_4106

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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34,145 + +0.1
34,191 + +0.4
34,374 - Dshi_4105 0.25 +1.6
34,395 + Dshi_4105 0.27 +0.8
34,524 - Dshi_4105 0.42 +1.0
34,650 + Dshi_4105 0.56 -0.4
35,116 - +0.2
35,156 + +0.5
35,184 + +1.1
35,192 - -1.1
35,423 + Dshi_4106 0.15 +1.5
35,528 + Dshi_4106 0.25 +1.9
35,530 + Dshi_4106 0.25 -0.6
35,559 + Dshi_4106 0.28 +0.7
35,611 - Dshi_4106 0.33 +0.5
35,763 - Dshi_4106 0.47 +0.7
35,765 + Dshi_4106 0.47 +0.3
35,838 - Dshi_4106 0.54 -0.4

Or see this region's nucleotide sequence