Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3568

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3567 and Dshi_3568 overlap by 22 nucleotidesDshi_3568 and Dshi_3569 overlap by 29 nucleotidesDshi_3569 and Dshi_3570 are separated by 35 nucleotides Dshi_3567: Dshi_3567 - preprotein translocase, SecA subunit (RefSeq), at 3,754,364 to 3,757,090 _3567 Dshi_3568: Dshi_3568 - OmpA domain protein (RefSeq), at 3,757,069 to 3,758,595 _3568 Dshi_3569: Dshi_3569 - DNA repair protein RadC (RefSeq), at 3,758,567 to 3,759,331 _3569 Dshi_3570: Dshi_3570 - chaperone protein DnaJ (RefSeq), at 3,759,367 to 3,760,518 _3570 Position (kb) 3757 3758 3759Strain fitness (log2 ratio) -1 0 1 2 3 4at 3757.199 kb on + strandat 3757.295 kb on + strand, within Dshi_3568at 3757.639 kb on - strand, within Dshi_3568at 3757.809 kb on - strand, within Dshi_3568at 3757.964 kb on - strand, within Dshi_3568at 3758.004 kb on - strand, within Dshi_3568at 3758.055 kb on + strand, within Dshi_3568at 3758.076 kb on - strand, within Dshi_3568at 3758.525 kb on - strandat 3758.679 kb on + strand, within Dshi_3569at 3758.737 kb on + strand, within Dshi_3569at 3758.745 kb on - strand, within Dshi_3569at 3758.816 kb on - strand, within Dshi_3569at 3758.870 kb on - strand, within Dshi_3569at 3758.952 kb on + strand, within Dshi_3569at 3758.991 kb on + strand, within Dshi_3569at 3759.020 kb on - strand, within Dshi_3569at 3759.185 kb on + strand, within Dshi_3569at 3759.218 kb on - strand, within Dshi_3569at 3759.328 kb on + strandat 3759.365 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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3,757,199 + +0.0
3,757,295 + Dshi_3568 0.15 -0.9
3,757,639 - Dshi_3568 0.37 +1.0
3,757,809 - Dshi_3568 0.48 -1.2
3,757,964 - Dshi_3568 0.59 -1.4
3,758,004 - Dshi_3568 0.61 -0.7
3,758,055 + Dshi_3568 0.65 +0.6
3,758,076 - Dshi_3568 0.66 +2.2
3,758,525 - -1.4
3,758,679 + Dshi_3569 0.15 -1.4
3,758,737 + Dshi_3569 0.22 -0.8
3,758,745 - Dshi_3569 0.23 +1.2
3,758,816 - Dshi_3569 0.33 +0.5
3,758,870 - Dshi_3569 0.40 -1.1
3,758,952 + Dshi_3569 0.50 +0.1
3,758,991 + Dshi_3569 0.55 +0.4
3,759,020 - Dshi_3569 0.59 -0.9
3,759,185 + Dshi_3569 0.81 -0.5
3,759,218 - Dshi_3569 0.85 +0.2
3,759,328 + +3.8
3,759,365 + -1.4

Or see this region's nucleotide sequence