Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2925 and Dshi_2926 are separated by 120 nucleotides Dshi_2926 and Dshi_2927 are separated by 49 nucleotides Dshi_2927 and Dshi_2928 overlap by 4 nucleotides Dshi_2928 and Dshi_2929 overlap by 34 nucleotides
Dshi_2925: Dshi_2925 - HAD-superfamily subfamily IIA hydrolase like protein (RefSeq), at 3,084,036 to 3,084,908
_2925
Dshi_2926: Dshi_2926 - MaoC domain protein dehydratase (RefSeq), at 3,085,029 to 3,085,472
_2926
Dshi_2927: Dshi_2927 - riboflavin biosynthesis protein RibF (RefSeq), at 3,085,522 to 3,086,475
_2927
Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963
_2928
Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763
_2929
Position (kb)
3085
3086
3087 Strain fitness (log2 ratio)
-1
0
1 at 3084.567 kb on + strand, within Dshi_2925 at 3084.578 kb on + strand, within Dshi_2925 at 3084.578 kb on + strand, within Dshi_2925 at 3084.599 kb on + strand, within Dshi_2925 at 3084.694 kb on - strand, within Dshi_2925 at 3084.710 kb on - strand, within Dshi_2925 at 3084.765 kb on - strand, within Dshi_2925 at 3085.147 kb on - strand, within Dshi_2926 at 3085.269 kb on + strand, within Dshi_2926 at 3085.440 kb on - strand at 3085.445 kb on - strand at 3085.481 kb on - strand at 3086.634 kb on - strand, within Dshi_2928 at 3086.645 kb on - strand, within Dshi_2928 at 3086.965 kb on - strand at 3087.011 kb on + strand at 3087.019 kb on - strand, within Dshi_2929 at 3087.019 kb on - strand, within Dshi_2929 at 3087.057 kb on - strand, within Dshi_2929 at 3087.135 kb on - strand, within Dshi_2929 at 3087.321 kb on - strand, within Dshi_2929 at 3087.432 kb on - strand, within Dshi_2929
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 3,084,567 + Dshi_2925 0.61 -1.0 3,084,578 + Dshi_2925 0.62 -0.7 3,084,578 + Dshi_2925 0.62 +0.8 3,084,599 + Dshi_2925 0.64 +0.0 3,084,694 - Dshi_2925 0.75 -0.2 3,084,710 - Dshi_2925 0.77 +0.3 3,084,765 - Dshi_2925 0.84 -0.7 3,085,147 - Dshi_2926 0.27 -1.6 3,085,269 + Dshi_2926 0.54 -0.7 3,085,440 - +0.0 3,085,445 - -1.7 3,085,481 - -0.3 3,086,634 - Dshi_2928 0.33 +0.1 3,086,645 - Dshi_2928 0.35 -1.4 3,086,965 - -1.1 3,087,011 + -0.4 3,087,019 - Dshi_2929 0.11 -1.1 3,087,019 - Dshi_2929 0.11 -0.6 3,087,057 - Dshi_2929 0.15 +1.4 3,087,135 - Dshi_2929 0.25 -0.2 3,087,321 - Dshi_2929 0.47 +1.6 3,087,432 - Dshi_2929 0.60 +0.6
Or see this region's nucleotide sequence