Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2901 and Dshi_2902 are separated by 143 nucleotides Dshi_2902 and Dshi_2903 are separated by 3 nucleotides
Dshi_2901: Dshi_2901 - hypothetical protein (RefSeq), at 3,056,406 to 3,058,565
_2901
Dshi_2902: Dshi_2902 - hypothetical protein (RefSeq), at 3,058,709 to 3,059,089
_2902
Dshi_2903: Dshi_2903 - hypothetical protein (RefSeq), at 3,059,093 to 3,061,177
_2903
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3057.773 kb on - strand, within Dshi_2901 at 3057.789 kb on + strand, within Dshi_2901 at 3057.789 kb on + strand, within Dshi_2901 at 3057.797 kb on - strand, within Dshi_2901 at 3057.825 kb on + strand, within Dshi_2901 at 3057.897 kb on + strand, within Dshi_2901 at 3057.897 kb on + strand, within Dshi_2901 at 3057.905 kb on + strand, within Dshi_2901 at 3058.038 kb on - strand, within Dshi_2901 at 3058.056 kb on + strand, within Dshi_2901 at 3058.072 kb on + strand, within Dshi_2901 at 3058.143 kb on + strand, within Dshi_2901 at 3058.211 kb on - strand, within Dshi_2901 at 3058.217 kb on - strand, within Dshi_2901 at 3058.228 kb on + strand, within Dshi_2901 at 3058.241 kb on - strand, within Dshi_2901 at 3058.315 kb on - strand, within Dshi_2901 at 3058.322 kb on - strand, within Dshi_2901 at 3058.381 kb on + strand at 3058.381 kb on + strand at 3058.389 kb on - strand at 3058.411 kb on + strand at 3058.508 kb on + strand at 3058.508 kb on + strand at 3058.516 kb on - strand at 3058.533 kb on + strand at 3058.619 kb on - strand at 3058.733 kb on + strand at 3058.757 kb on + strand, within Dshi_2902 at 3058.760 kb on - strand, within Dshi_2902 at 3058.762 kb on + strand, within Dshi_2902 at 3058.770 kb on - strand, within Dshi_2902 at 3058.770 kb on - strand, within Dshi_2902 at 3058.772 kb on + strand, within Dshi_2902 at 3058.785 kb on - strand, within Dshi_2902 at 3058.850 kb on + strand, within Dshi_2902 at 3058.850 kb on + strand, within Dshi_2902 at 3058.859 kb on - strand, within Dshi_2902 at 3058.988 kb on - strand, within Dshi_2902 at 3059.035 kb on + strand, within Dshi_2902 at 3059.114 kb on + strand at 3059.280 kb on - strand at 3059.335 kb on - strand, within Dshi_2903 at 3059.371 kb on - strand, within Dshi_2903 at 3059.398 kb on + strand, within Dshi_2903 at 3059.406 kb on - strand, within Dshi_2903 at 3059.449 kb on - strand, within Dshi_2903 at 3059.470 kb on - strand, within Dshi_2903 at 3059.755 kb on - strand, within Dshi_2903 at 3059.755 kb on - strand, within Dshi_2903 at 3059.762 kb on + strand, within Dshi_2903 at 3059.821 kb on + strand, within Dshi_2903 at 3059.829 kb on - strand, within Dshi_2903 at 3059.959 kb on + strand, within Dshi_2903 at 3060.046 kb on + strand, within Dshi_2903 at 3060.046 kb on + strand, within Dshi_2903 at 3060.046 kb on + strand, within Dshi_2903
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 3,057,773 - Dshi_2901 0.63 +1.0 3,057,789 + Dshi_2901 0.64 -0.3 3,057,789 + Dshi_2901 0.64 -0.4 3,057,797 - Dshi_2901 0.64 +1.4 3,057,825 + Dshi_2901 0.66 -0.7 3,057,897 + Dshi_2901 0.69 -0.0 3,057,897 + Dshi_2901 0.69 -0.4 3,057,905 + Dshi_2901 0.69 -1.5 3,058,038 - Dshi_2901 0.76 -1.3 3,058,056 + Dshi_2901 0.76 -0.5 3,058,072 + Dshi_2901 0.77 -0.4 3,058,143 + Dshi_2901 0.80 +1.1 3,058,211 - Dshi_2901 0.84 +0.8 3,058,217 - Dshi_2901 0.84 +0.0 3,058,228 + Dshi_2901 0.84 +0.6 3,058,241 - Dshi_2901 0.85 -1.8 3,058,315 - Dshi_2901 0.88 -2.3 3,058,322 - Dshi_2901 0.89 +1.4 3,058,381 + +1.4 3,058,381 + +0.4 3,058,389 - +0.1 3,058,411 + -0.1 3,058,508 + -1.4 3,058,508 + -1.6 3,058,516 - +0.1 3,058,533 + +1.4 3,058,619 - -0.9 3,058,733 + +0.7 3,058,757 + Dshi_2902 0.13 +0.5 3,058,760 - Dshi_2902 0.13 +1.2 3,058,762 + Dshi_2902 0.14 +2.2 3,058,770 - Dshi_2902 0.16 +0.5 3,058,770 - Dshi_2902 0.16 -0.3 3,058,772 + Dshi_2902 0.17 -0.9 3,058,785 - Dshi_2902 0.20 +0.8 3,058,850 + Dshi_2902 0.37 -2.3 3,058,850 + Dshi_2902 0.37 -0.3 3,058,859 - Dshi_2902 0.39 -0.9 3,058,988 - Dshi_2902 0.73 +0.5 3,059,035 + Dshi_2902 0.86 -0.5 3,059,114 + -2.1 3,059,280 - +0.2 3,059,335 - Dshi_2903 0.12 -1.5 3,059,371 - Dshi_2903 0.13 +0.1 3,059,398 + Dshi_2903 0.15 +0.9 3,059,406 - Dshi_2903 0.15 +0.5 3,059,449 - Dshi_2903 0.17 +1.0 3,059,470 - Dshi_2903 0.18 -0.4 3,059,755 - Dshi_2903 0.32 -0.4 3,059,755 - Dshi_2903 0.32 -0.1 3,059,762 + Dshi_2903 0.32 -0.6 3,059,821 + Dshi_2903 0.35 +1.4 3,059,829 - Dshi_2903 0.35 -0.3 3,059,959 + Dshi_2903 0.42 +0.1 3,060,046 + Dshi_2903 0.46 -0.3 3,060,046 + Dshi_2903 0.46 -1.0 3,060,046 + Dshi_2903 0.46 -1.1
Or see this region's nucleotide sequence