Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2863

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2861 and Dshi_2862 are separated by 29 nucleotidesDshi_2862 and Dshi_2863 overlap by 4 nucleotidesDshi_2863 and Dshi_2864 are separated by 2 nucleotidesDshi_2864 and Dshi_2865 are separated by 145 nucleotides Dshi_2861: Dshi_2861 - succinate dehydrogenase and fumarate reductase iron-sulfur protein (RefSeq), at 3,018,314 to 3,019,093 _2861 Dshi_2862: Dshi_2862 - hypothetical protein (RefSeq), at 3,019,123 to 3,019,902 _2862 Dshi_2863: Dshi_2863 - hypothetical protein (RefSeq), at 3,019,899 to 3,020,720 _2863 Dshi_2864: Dshi_2864 - hypothetical protein (RefSeq), at 3,020,723 to 3,021,550 _2864 Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498 _2865 Position (kb) 3019 3020 3021Strain fitness (log2 ratio) -1 0 1at 3019.175 kb on + strandat 3019.288 kb on - strand, within Dshi_2862at 3019.308 kb on + strand, within Dshi_2862at 3019.331 kb on - strand, within Dshi_2862at 3019.430 kb on + strand, within Dshi_2862at 3019.438 kb on - strand, within Dshi_2862at 3019.582 kb on + strand, within Dshi_2862at 3019.590 kb on - strand, within Dshi_2862at 3019.620 kb on + strand, within Dshi_2862at 3019.667 kb on - strand, within Dshi_2862at 3019.669 kb on + strand, within Dshi_2862at 3019.767 kb on - strand, within Dshi_2862at 3019.785 kb on - strand, within Dshi_2862at 3019.808 kb on + strand, within Dshi_2862at 3019.811 kb on - strand, within Dshi_2862at 3019.849 kb on - strandat 3019.983 kb on - strand, within Dshi_2863at 3020.023 kb on + strand, within Dshi_2863at 3020.031 kb on - strand, within Dshi_2863at 3020.031 kb on - strand, within Dshi_2863at 3020.233 kb on + strand, within Dshi_2863at 3020.287 kb on + strand, within Dshi_2863at 3020.374 kb on - strand, within Dshi_2863at 3020.491 kb on + strand, within Dshi_2863at 3020.499 kb on - strand, within Dshi_2863at 3020.499 kb on - strand, within Dshi_2863at 3020.555 kb on + strand, within Dshi_2863at 3020.592 kb on - strand, within Dshi_2863at 3020.737 kb on - strandat 3020.747 kb on - strandat 3020.881 kb on + strand, within Dshi_2864at 3020.966 kb on - strand, within Dshi_2864at 3021.118 kb on + strand, within Dshi_2864at 3021.223 kb on - strand, within Dshi_2864at 3021.429 kb on + strand, within Dshi_2864at 3021.439 kb on - strand, within Dshi_2864at 3021.492 kb on - strandat 3021.559 kb on + strandat 3021.559 kb on + strandat 3021.570 kb on + strandat 3021.608 kb on + strandat 3021.613 kb on + strandat 3021.613 kb on + strandat 3021.647 kb on - strandat 3021.666 kb on - strandat 3021.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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3,019,175 + -0.1
3,019,288 - Dshi_2862 0.21 +0.4
3,019,308 + Dshi_2862 0.24 -0.3
3,019,331 - Dshi_2862 0.27 -0.6
3,019,430 + Dshi_2862 0.39 +0.2
3,019,438 - Dshi_2862 0.40 +1.1
3,019,582 + Dshi_2862 0.59 -0.3
3,019,590 - Dshi_2862 0.60 -0.9
3,019,620 + Dshi_2862 0.64 +0.1
3,019,667 - Dshi_2862 0.70 +0.1
3,019,669 + Dshi_2862 0.70 -0.1
3,019,767 - Dshi_2862 0.83 +0.3
3,019,785 - Dshi_2862 0.85 -0.4
3,019,808 + Dshi_2862 0.88 +1.6
3,019,811 - Dshi_2862 0.88 +0.4
3,019,849 - -0.5
3,019,983 - Dshi_2863 0.10 +0.7
3,020,023 + Dshi_2863 0.15 -0.0
3,020,031 - Dshi_2863 0.16 -0.2
3,020,031 - Dshi_2863 0.16 -1.1
3,020,233 + Dshi_2863 0.41 -1.0
3,020,287 + Dshi_2863 0.47 -0.3
3,020,374 - Dshi_2863 0.58 +0.9
3,020,491 + Dshi_2863 0.72 +0.6
3,020,499 - Dshi_2863 0.73 -0.0
3,020,499 - Dshi_2863 0.73 -0.8
3,020,555 + Dshi_2863 0.80 +0.3
3,020,592 - Dshi_2863 0.84 +0.1
3,020,737 - -0.8
3,020,747 - +1.7
3,020,881 + Dshi_2864 0.19 -0.1
3,020,966 - Dshi_2864 0.29 -0.1
3,021,118 + Dshi_2864 0.48 -0.1
3,021,223 - Dshi_2864 0.60 +0.4
3,021,429 + Dshi_2864 0.85 -0.2
3,021,439 - Dshi_2864 0.86 -0.5
3,021,492 - -0.1
3,021,559 + -0.6
3,021,559 + -0.2
3,021,570 + +0.6
3,021,608 + -0.3
3,021,613 + -0.6
3,021,613 + -1.3
3,021,647 - -0.0
3,021,666 - -0.2
3,021,667 - -0.6

Or see this region's nucleotide sequence