Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2782

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2780 and Dshi_2781 are separated by 326 nucleotidesDshi_2781 and Dshi_2782 are separated by 132 nucleotidesDshi_2782 and Dshi_2783 are separated by 472 nucleotides Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887 _2780 Dshi_2781: Dshi_2781 - ribosomal protein L33 (RefSeq), at 2,942,214 to 2,942,381 _2781 Dshi_2782: Dshi_2782 - PAS fold-4 domain protein (RefSeq), at 2,942,514 to 2,943,002 _2782 Dshi_2783: Dshi_2783 - N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq), at 2,943,475 to 2,944,113 _2783 Position (kb) 2942 2943 2944Strain fitness (log2 ratio) -1 0 1at 2941.871 kb on + strandat 2941.920 kb on - strandat 2941.956 kb on + strandat 2942.753 kb on + strand, within Dshi_2782at 2943.566 kb on - strand, within Dshi_2783at 2943.577 kb on - strand, within Dshi_2783at 2943.627 kb on + strand, within Dshi_2783at 2943.881 kb on - strand, within Dshi_2783

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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2,941,871 + -0.9
2,941,920 - +0.5
2,941,956 + +0.6
2,942,753 + Dshi_2782 0.49 -1.0
2,943,566 - Dshi_2783 0.14 +0.2
2,943,577 - Dshi_2783 0.16 -1.3
2,943,627 + Dshi_2783 0.24 -0.8
2,943,881 - Dshi_2783 0.64 -0.2

Or see this region's nucleotide sequence