Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2726

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2725 and Dshi_2726 are separated by 127 nucleotidesDshi_2726 and Dshi_2727 are separated by 68 nucleotides Dshi_2725: Dshi_2725 - signal recognition particle-docking protein FtsY (RefSeq), at 2,886,699 to 2,888,198 _2725 Dshi_2726: Dshi_2726 - hypothetical protein (RefSeq), at 2,888,326 to 2,888,730 _2726 Dshi_2727: Dshi_2727 - exodeoxyribonuclease VII, large subunit (RefSeq), at 2,888,799 to 2,890,370 _2727 Position (kb) 2888 2889Strain fitness (log2 ratio) -1 0 1 2 3 4at 2888.338 kb on + strandat 2888.341 kb on - strandat 2888.346 kb on - strandat 2888.348 kb on + strandat 2888.477 kb on + strand, within Dshi_2726at 2888.486 kb on - strand, within Dshi_2726at 2888.631 kb on + strand, within Dshi_2726at 2888.644 kb on - strand, within Dshi_2726at 2888.703 kb on - strandat 2888.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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2,888,338 + -1.0
2,888,341 - +2.0
2,888,346 - +3.9
2,888,348 + -1.5
2,888,477 + Dshi_2726 0.37 +3.9
2,888,486 - Dshi_2726 0.40 -0.1
2,888,631 + Dshi_2726 0.75 +1.3
2,888,644 - Dshi_2726 0.79 +2.4
2,888,703 - +0.5
2,888,838 - -0.2

Or see this region's nucleotide sequence