Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2009 and Dshi_2010 are separated by 62 nucleotides Dshi_2010 and Dshi_2011 overlap by 4 nucleotides Dshi_2011 and Dshi_2012 overlap by 1 nucleotides Dshi_2012 and Dshi_2013 overlap by 4 nucleotides
Dshi_2009: Dshi_2009 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 2,128,649 to 2,129,623
_2009
Dshi_2010: Dshi_2010 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 2,129,686 to 2,130,483
_2010
Dshi_2011: Dshi_2011 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,130,480 to 2,131,292
_2011
Dshi_2012: Dshi_2012 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,131,292 to 2,132,107
_2012
Dshi_2013: Dshi_2013 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,132,104 to 2,133,009
_2013
Position (kb)
2130
2131
2132 Strain fitness (log2 ratio)
-2
-1
0
1 at 2129.561 kb on - strand at 2129.873 kb on + strand, within Dshi_2010 at 2130.025 kb on + strand, within Dshi_2010 at 2130.081 kb on + strand, within Dshi_2010 at 2130.089 kb on - strand, within Dshi_2010 at 2130.199 kb on - strand, within Dshi_2010 at 2130.214 kb on - strand, within Dshi_2010 at 2130.224 kb on - strand, within Dshi_2010 at 2130.337 kb on + strand, within Dshi_2010 at 2130.358 kb on + strand, within Dshi_2010 at 2130.499 kb on - strand at 2130.666 kb on + strand, within Dshi_2011 at 2130.753 kb on + strand, within Dshi_2011 at 2130.802 kb on + strand, within Dshi_2011 at 2131.059 kb on + strand, within Dshi_2011 at 2131.097 kb on - strand, within Dshi_2011 at 2131.178 kb on - strand, within Dshi_2011 at 2131.308 kb on + strand at 2131.413 kb on + strand, within Dshi_2012 at 2132.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 2,129,561 - -1.6 2,129,873 + Dshi_2010 0.23 +0.3 2,130,025 + Dshi_2010 0.42 -1.9 2,130,081 + Dshi_2010 0.49 -0.8 2,130,089 - Dshi_2010 0.51 +1.3 2,130,199 - Dshi_2010 0.64 +0.3 2,130,214 - Dshi_2010 0.66 +0.7 2,130,224 - Dshi_2010 0.67 -1.2 2,130,337 + Dshi_2010 0.82 -0.3 2,130,358 + Dshi_2010 0.84 -0.0 2,130,499 - -1.6 2,130,666 + Dshi_2011 0.23 -0.5 2,130,753 + Dshi_2011 0.34 -0.6 2,130,802 + Dshi_2011 0.40 -2.2 2,131,059 + Dshi_2011 0.71 -1.3 2,131,097 - Dshi_2011 0.76 -0.7 2,131,178 - Dshi_2011 0.86 -0.7 2,131,308 + +0.5 2,131,413 + Dshi_2012 0.15 +1.3 2,132,179 - +0.9
Or see this region's nucleotide sequence