Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2011

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2009 and Dshi_2010 are separated by 62 nucleotidesDshi_2010 and Dshi_2011 overlap by 4 nucleotidesDshi_2011 and Dshi_2012 overlap by 1 nucleotidesDshi_2012 and Dshi_2013 overlap by 4 nucleotides Dshi_2009: Dshi_2009 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 2,128,649 to 2,129,623 _2009 Dshi_2010: Dshi_2010 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 2,129,686 to 2,130,483 _2010 Dshi_2011: Dshi_2011 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,130,480 to 2,131,292 _2011 Dshi_2012: Dshi_2012 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 2,131,292 to 2,132,107 _2012 Dshi_2013: Dshi_2013 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,132,104 to 2,133,009 _2013 Position (kb) 2130 2131 2132Strain fitness (log2 ratio) -2 -1 0 1at 2129.561 kb on - strandat 2129.873 kb on + strand, within Dshi_2010at 2130.025 kb on + strand, within Dshi_2010at 2130.081 kb on + strand, within Dshi_2010at 2130.089 kb on - strand, within Dshi_2010at 2130.199 kb on - strand, within Dshi_2010at 2130.214 kb on - strand, within Dshi_2010at 2130.224 kb on - strand, within Dshi_2010at 2130.337 kb on + strand, within Dshi_2010at 2130.358 kb on + strand, within Dshi_2010at 2130.499 kb on - strandat 2130.666 kb on + strand, within Dshi_2011at 2130.753 kb on + strand, within Dshi_2011at 2130.802 kb on + strand, within Dshi_2011at 2131.059 kb on + strand, within Dshi_2011at 2131.097 kb on - strand, within Dshi_2011at 2131.178 kb on - strand, within Dshi_2011at 2131.308 kb on + strandat 2131.413 kb on + strand, within Dshi_2012at 2132.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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2,129,561 - -1.6
2,129,873 + Dshi_2010 0.23 +0.3
2,130,025 + Dshi_2010 0.42 -1.9
2,130,081 + Dshi_2010 0.49 -0.8
2,130,089 - Dshi_2010 0.51 +1.3
2,130,199 - Dshi_2010 0.64 +0.3
2,130,214 - Dshi_2010 0.66 +0.7
2,130,224 - Dshi_2010 0.67 -1.2
2,130,337 + Dshi_2010 0.82 -0.3
2,130,358 + Dshi_2010 0.84 -0.0
2,130,499 - -1.6
2,130,666 + Dshi_2011 0.23 -0.5
2,130,753 + Dshi_2011 0.34 -0.6
2,130,802 + Dshi_2011 0.40 -2.2
2,131,059 + Dshi_2011 0.71 -1.3
2,131,097 - Dshi_2011 0.76 -0.7
2,131,178 - Dshi_2011 0.86 -0.7
2,131,308 + +0.5
2,131,413 + Dshi_2012 0.15 +1.3
2,132,179 - +0.9

Or see this region's nucleotide sequence