Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1742 and Dshi_1743 are separated by 3 nucleotides Dshi_1743 and Dshi_1744 are separated by 331 nucleotides Dshi_1744 and Dshi_1745 are separated by 88 nucleotides
Dshi_1742: Dshi_1742 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,808,288 to 1,809,310
_1742
Dshi_1743: Dshi_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,809,314 to 1,809,916
_1743
Dshi_1744: Dshi_1744 - pantetheine-phosphate adenylyltransferase (RefSeq), at 1,810,248 to 1,810,763
_1744
Dshi_1745: Dshi_1745 - putative signal-transduction protein with CBS domains (RefSeq), at 1,810,852 to 1,811,286
_1745
Position (kb)
1809
1810 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1809.540 kb on - strand, within Dshi_1743 at 1809.543 kb on + strand, within Dshi_1743 at 1809.622 kb on - strand, within Dshi_1743 at 1809.800 kb on - strand, within Dshi_1743 at 1809.948 kb on + strand at 1810.822 kb on + strand at 1810.827 kb on + strand at 1810.830 kb on - strand at 1810.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 1,809,540 - Dshi_1743 0.37 -1.7 1,809,543 + Dshi_1743 0.38 -3.4 1,809,622 - Dshi_1743 0.51 +0.3 1,809,800 - Dshi_1743 0.81 -0.9 1,809,948 + -1.2 1,810,822 + -0.8 1,810,827 + -0.7 1,810,830 - +0.3 1,810,841 - -0.3
Or see this region's nucleotide sequence