Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0964 and Dshi_0965 are separated by 111 nucleotides Dshi_0965 and Dshi_0967 are separated by 668 nucleotides
Dshi_0964: Dshi_0964 - hypothetical protein (RefSeq), at 987,364 to 987,915
_0964
Dshi_0965: Dshi_0965 - hypothetical protein (RefSeq), at 988,027 to 988,380
_0965
Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933
_0967
Position (kb) 988
989 Strain fitness (log2 ratio) -1
0
1
2 at 987.082 kb on + strand at 987.116 kb on + strand at 987.126 kb on + strand at 987.175 kb on - strand at 987.180 kb on - strand at 987.207 kb on + strand at 987.214 kb on + strand at 987.253 kb on + strand at 987.265 kb on + strand at 987.265 kb on + strand at 987.273 kb on - strand at 987.290 kb on - strand at 987.293 kb on + strand at 987.293 kb on + strand at 987.310 kb on + strand at 987.328 kb on - strand at 987.397 kb on - strand at 987.426 kb on - strand, within Dshi_0964 at 987.470 kb on - strand, within Dshi_0964 at 987.470 kb on - strand, within Dshi_0964 at 987.496 kb on + strand, within Dshi_0964 at 987.649 kb on + strand, within Dshi_0964 at 987.649 kb on + strand, within Dshi_0964 at 987.657 kb on - strand, within Dshi_0964 at 987.775 kb on - strand, within Dshi_0964 at 987.795 kb on - strand, within Dshi_0964 at 988.008 kb on - strand at 988.022 kb on - strand at 988.044 kb on + strand at 988.052 kb on - strand at 988.088 kb on + strand, within Dshi_0965 at 988.116 kb on + strand, within Dshi_0965 at 988.136 kb on + strand, within Dshi_0965 at 988.153 kb on - strand, within Dshi_0965 at 988.167 kb on + strand, within Dshi_0965 at 988.183 kb on - strand, within Dshi_0965 at 988.219 kb on - strand, within Dshi_0965 at 988.298 kb on - strand, within Dshi_0965 at 988.298 kb on - strand, within Dshi_0965 at 988.321 kb on - strand, within Dshi_0965 at 988.333 kb on + strand, within Dshi_0965 at 988.361 kb on + strand at 988.369 kb on - strand at 988.376 kb on + strand at 988.392 kb on - strand at 988.393 kb on - strand at 988.548 kb on - strand at 988.551 kb on + strand at 988.552 kb on + strand at 988.555 kb on - strand at 988.561 kb on - strand at 988.567 kb on - strand at 988.663 kb on + strand at 988.670 kb on + strand at 988.707 kb on + strand at 988.715 kb on - strand at 988.747 kb on - strand at 988.851 kb on - strand at 988.979 kb on - strand at 988.997 kb on + strand at 989.019 kb on + strand at 989.090 kb on + strand at 989.097 kb on + strand at 989.115 kb on - strand at 989.237 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.264 kb on - strand, within Dshi_0967 at 989.264 kb on - strand, within Dshi_0967 at 989.322 kb on + strand, within Dshi_0967 at 989.332 kb on - strand, within Dshi_0967
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 987,082 + -0.3 987,116 + +1.0 987,126 + -0.2 987,175 - +1.0 987,180 - +0.9 987,207 + +0.1 987,214 + -0.7 987,253 + -0.9 987,265 + -0.7 987,265 + -0.1 987,273 - +0.4 987,290 - -0.4 987,293 + +0.1 987,293 + +0.9 987,310 + +0.7 987,328 - +0.1 987,397 - +0.8 987,426 - Dshi_0964 0.11 +0.0 987,470 - Dshi_0964 0.19 -0.6 987,470 - Dshi_0964 0.19 +0.2 987,496 + Dshi_0964 0.24 -0.2 987,649 + Dshi_0964 0.52 +1.2 987,649 + Dshi_0964 0.52 -0.3 987,657 - Dshi_0964 0.53 -0.2 987,775 - Dshi_0964 0.74 -0.2 987,795 - Dshi_0964 0.78 -0.2 988,008 - +0.3 988,022 - -1.5 988,044 + -0.3 988,052 - -0.6 988,088 + Dshi_0965 0.17 -0.0 988,116 + Dshi_0965 0.25 +0.4 988,136 + Dshi_0965 0.31 -0.7 988,153 - Dshi_0965 0.36 -0.2 988,167 + Dshi_0965 0.40 +0.7 988,183 - Dshi_0965 0.44 -0.9 988,219 - Dshi_0965 0.54 +0.5 988,298 - Dshi_0965 0.77 -0.9 988,298 - Dshi_0965 0.77 +0.6 988,321 - Dshi_0965 0.83 -0.1 988,333 + Dshi_0965 0.86 +0.4 988,361 + +0.1 988,369 - -0.9 988,376 + +1.0 988,392 - +0.1 988,393 - +0.9 988,548 - +0.3 988,551 + +0.4 988,552 + +1.7 988,555 - +1.5 988,561 - -0.5 988,567 - -0.5 988,663 + +1.0 988,670 + -0.4 988,707 + +2.7 988,715 - +0.6 988,747 - +0.5 988,851 - +0.7 988,979 - -0.4 988,997 + -0.2 989,019 + +0.3 989,090 + +0.2 989,097 + +0.6 989,115 - +1.5 989,237 + Dshi_0967 0.21 -0.2 989,256 + Dshi_0967 0.23 -1.0 989,256 + Dshi_0967 0.23 +0.7 989,256 + Dshi_0967 0.23 +0.0 989,256 + Dshi_0967 0.23 +2.0 989,264 - Dshi_0967 0.24 +0.7 989,264 - Dshi_0967 0.24 +1.0 989,322 + Dshi_0967 0.31 +1.5 989,332 - Dshi_0967 0.32 +0.7
Or see this region's nucleotide sequence