Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0739 and Dshi_0740 are separated by 93 nucleotides Dshi_0740 and Dshi_0741 are separated by 39 nucleotides Dshi_0741 and Dshi_0742 overlap by 4 nucleotides
Dshi_0739: Dshi_0739 - Ppx/GppA phosphatase (RefSeq), at 744,912 to 746,432
_0739
Dshi_0740: Dshi_0740 - Polyphosphate kinase (RefSeq), at 746,526 to 748,700
_0740
Dshi_0741: Dshi_0741 - chromosomal replication initiator, DnaA (RefSeq), at 748,740 to 749,429
_0741
Dshi_0742: Dshi_0742 - protein of unknown function UPF0118 (RefSeq), at 749,426 to 750,511
_0742
Position (kb) 746
747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2 at 745.643 kb on + strand, within Dshi_0739 at 745.683 kb on - strand, within Dshi_0739 at 745.990 kb on + strand, within Dshi_0739 at 746.185 kb on - strand, within Dshi_0739 at 746.309 kb on + strand at 746.455 kb on - strand at 746.524 kb on + strand at 746.617 kb on - strand at 746.642 kb on + strand at 746.680 kb on + strand at 746.688 kb on - strand at 746.872 kb on + strand, within Dshi_0740 at 746.939 kb on - strand, within Dshi_0740 at 746.939 kb on - strand, within Dshi_0740 at 747.060 kb on - strand, within Dshi_0740 at 747.152 kb on + strand, within Dshi_0740 at 747.205 kb on - strand, within Dshi_0740 at 747.250 kb on + strand, within Dshi_0740 at 747.250 kb on + strand, within Dshi_0740 at 747.258 kb on - strand, within Dshi_0740 at 747.265 kb on + strand, within Dshi_0740 at 747.296 kb on + strand, within Dshi_0740 at 747.386 kb on - strand, within Dshi_0740 at 747.474 kb on - strand, within Dshi_0740 at 747.585 kb on - strand, within Dshi_0740 at 747.611 kb on - strand, within Dshi_0740 at 747.620 kb on - strand, within Dshi_0740 at 748.116 kb on - strand, within Dshi_0740 at 748.197 kb on + strand, within Dshi_0740 at 748.222 kb on + strand, within Dshi_0740 at 748.390 kb on - strand, within Dshi_0740 at 748.576 kb on - strand at 748.604 kb on + strand at 748.650 kb on - strand at 748.674 kb on - strand at 749.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 745,643 + Dshi_0739 0.48 -0.5 745,683 - Dshi_0739 0.51 -1.9 745,990 + Dshi_0739 0.71 -1.7 746,185 - Dshi_0739 0.84 -0.9 746,309 + -1.8 746,455 - -1.2 746,524 + +1.3 746,617 - +0.8 746,642 + -0.5 746,680 + +1.4 746,688 - -0.6 746,872 + Dshi_0740 0.16 -0.1 746,939 - Dshi_0740 0.19 +1.4 746,939 - Dshi_0740 0.19 +0.5 747,060 - Dshi_0740 0.25 +0.4 747,152 + Dshi_0740 0.29 -0.2 747,205 - Dshi_0740 0.31 +0.8 747,250 + Dshi_0740 0.33 -0.2 747,250 + Dshi_0740 0.33 +1.4 747,258 - Dshi_0740 0.34 -2.3 747,265 + Dshi_0740 0.34 -1.3 747,296 + Dshi_0740 0.35 +0.4 747,386 - Dshi_0740 0.40 +0.3 747,474 - Dshi_0740 0.44 +1.0 747,585 - Dshi_0740 0.49 -0.4 747,611 - Dshi_0740 0.50 +2.1 747,620 - Dshi_0740 0.50 +0.3 748,116 - Dshi_0740 0.73 -0.6 748,197 + Dshi_0740 0.77 +1.4 748,222 + Dshi_0740 0.78 -0.7 748,390 - Dshi_0740 0.86 -0.3 748,576 - -1.1 748,604 + -0.1 748,650 - -1.9 748,674 - +0.1 749,487 + -1.3
Or see this region's nucleotide sequence