Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0709

Experiment: m.b. acetate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0708 and Dshi_0709 are separated by 471 nucleotidesDshi_0709 and Dshi_0710 are separated by 65 nucleotidesDshi_0710 and Dshi_0711 overlap by 55 nucleotides Dshi_0708: Dshi_0708 - hypothetical protein (RefSeq), at 715,275 to 716,246 _0708 Dshi_0709: Dshi_0709 - coenzyme A transferase (RefSeq), at 716,718 to 718,664 _0709 Dshi_0710: Dshi_0710 - hypothetical protein (RefSeq), at 718,730 to 719,377 _0710 Dshi_0711: Dshi_0711 - transcriptional regulator, LysR family (RefSeq), at 719,323 to 720,249 _0711 Position (kb) 716 717 718 719Strain fitness (log2 ratio) -2 -1 0 1 2at 715.770 kb on + strand, within Dshi_0708at 715.822 kb on + strand, within Dshi_0708at 715.836 kb on + strand, within Dshi_0708at 715.946 kb on + strand, within Dshi_0708at 716.054 kb on + strand, within Dshi_0708at 716.142 kb on - strand, within Dshi_0708at 716.146 kb on - strand, within Dshi_0708at 716.152 kb on - strandat 716.157 kb on + strandat 716.157 kb on - strandat 716.211 kb on - strandat 716.652 kb on + strandat 716.692 kb on - strandat 716.698 kb on + strandat 716.706 kb on - strandat 716.832 kb on + strandat 716.863 kb on + strandat 716.898 kb on + strandat 716.988 kb on - strand, within Dshi_0709at 716.999 kb on + strand, within Dshi_0709at 717.002 kb on - strand, within Dshi_0709at 717.032 kb on + strand, within Dshi_0709at 717.088 kb on - strand, within Dshi_0709at 717.104 kb on + strand, within Dshi_0709at 717.110 kb on - strand, within Dshi_0709at 717.136 kb on - strand, within Dshi_0709at 717.157 kb on + strand, within Dshi_0709at 717.206 kb on + strand, within Dshi_0709at 717.214 kb on - strand, within Dshi_0709at 717.235 kb on - strand, within Dshi_0709at 717.385 kb on + strand, within Dshi_0709at 717.385 kb on + strand, within Dshi_0709at 717.385 kb on + strand, within Dshi_0709at 717.410 kb on + strand, within Dshi_0709at 717.434 kb on + strand, within Dshi_0709at 717.458 kb on + strand, within Dshi_0709at 717.485 kb on - strand, within Dshi_0709at 717.503 kb on + strand, within Dshi_0709at 717.511 kb on - strand, within Dshi_0709at 717.621 kb on + strand, within Dshi_0709at 717.622 kb on + strand, within Dshi_0709at 717.664 kb on - strand, within Dshi_0709at 717.797 kb on + strand, within Dshi_0709at 717.810 kb on + strand, within Dshi_0709at 717.812 kb on + strand, within Dshi_0709at 717.818 kb on - strand, within Dshi_0709at 717.830 kb on - strand, within Dshi_0709at 717.986 kb on + strand, within Dshi_0709at 718.290 kb on - strand, within Dshi_0709at 718.317 kb on + strand, within Dshi_0709at 718.365 kb on + strand, within Dshi_0709at 718.366 kb on + strand, within Dshi_0709at 718.396 kb on - strand, within Dshi_0709at 718.405 kb on - strand, within Dshi_0709at 718.407 kb on + strand, within Dshi_0709at 718.556 kb on + strandat 718.579 kb on + strandat 718.736 kb on - strandat 718.931 kb on - strand, within Dshi_0710at 719.086 kb on - strand, within Dshi_0710at 719.246 kb on - strand, within Dshi_0710at 719.273 kb on + strand, within Dshi_0710at 719.396 kb on + strandat 719.396 kb on + strandat 719.422 kb on + strand, within Dshi_0711at 719.638 kb on - strand, within Dshi_0711

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
remove
715,770 + Dshi_0708 0.51 +0.8
715,822 + Dshi_0708 0.56 +1.6
715,836 + Dshi_0708 0.58 +0.7
715,946 + Dshi_0708 0.69 -1.1
716,054 + Dshi_0708 0.80 +1.2
716,142 - Dshi_0708 0.89 -0.5
716,146 - Dshi_0708 0.90 -1.4
716,152 - +0.4
716,157 + +0.8
716,157 - +0.7
716,211 - +2.0
716,652 + -0.4
716,692 - -0.5
716,698 + -0.2
716,706 - -0.9
716,832 + -1.5
716,863 + +0.1
716,898 + +1.2
716,988 - Dshi_0709 0.14 -1.2
716,999 + Dshi_0709 0.14 -1.8
717,002 - Dshi_0709 0.15 +0.8
717,032 + Dshi_0709 0.16 -0.6
717,088 - Dshi_0709 0.19 -1.4
717,104 + Dshi_0709 0.20 +0.7
717,110 - Dshi_0709 0.20 -1.0
717,136 - Dshi_0709 0.21 -2.4
717,157 + Dshi_0709 0.23 +0.2
717,206 + Dshi_0709 0.25 -1.1
717,214 - Dshi_0709 0.25 -0.3
717,235 - Dshi_0709 0.27 +0.4
717,385 + Dshi_0709 0.34 -1.1
717,385 + Dshi_0709 0.34 +0.2
717,385 + Dshi_0709 0.34 -0.9
717,410 + Dshi_0709 0.36 +2.1
717,434 + Dshi_0709 0.37 +1.3
717,458 + Dshi_0709 0.38 -0.5
717,485 - Dshi_0709 0.39 -0.6
717,503 + Dshi_0709 0.40 +2.3
717,511 - Dshi_0709 0.41 -0.5
717,621 + Dshi_0709 0.46 -1.8
717,622 + Dshi_0709 0.46 +0.6
717,664 - Dshi_0709 0.49 +0.8
717,797 + Dshi_0709 0.55 +0.5
717,810 + Dshi_0709 0.56 -0.8
717,812 + Dshi_0709 0.56 -0.8
717,818 - Dshi_0709 0.56 +0.3
717,830 - Dshi_0709 0.57 -0.3
717,986 + Dshi_0709 0.65 -1.0
718,290 - Dshi_0709 0.81 +0.1
718,317 + Dshi_0709 0.82 -2.0
718,365 + Dshi_0709 0.85 -0.3
718,366 + Dshi_0709 0.85 +0.7
718,396 - Dshi_0709 0.86 +0.0
718,405 - Dshi_0709 0.87 -0.3
718,407 + Dshi_0709 0.87 -0.8
718,556 + -0.1
718,579 + +1.3
718,736 - -0.8
718,931 - Dshi_0710 0.31 -1.0
719,086 - Dshi_0710 0.55 +1.9
719,246 - Dshi_0710 0.80 +0.7
719,273 + Dshi_0710 0.84 +1.3
719,396 + -0.9
719,396 + +2.3
719,422 + Dshi_0711 0.11 +1.0
719,638 - Dshi_0711 0.34 -0.9

Or see this region's nucleotide sequence