Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0633

Experiment: m.b. acetate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0632 and Dshi_0633 overlap by 4 nucleotidesDshi_0633 and Dshi_0634 are separated by 204 nucleotides Dshi_0632: Dshi_0632 - acetate kinase (RefSeq), at 629,832 to 630,980 _0632 Dshi_0633: Dshi_0633 - Phosphate butyryltransferase (RefSeq), at 630,977 to 632,392 _0633 Dshi_0634: Dshi_0634 - glycosyltransferase, putative (RefSeq), at 632,597 to 633,406 _0634 Position (kb) 630 631 632 633Strain fitness (log2 ratio) -2 -1 0 1 2at 630.151 kb on - strand, within Dshi_0632at 630.199 kb on - strand, within Dshi_0632at 630.221 kb on + strand, within Dshi_0632at 630.236 kb on - strand, within Dshi_0632at 630.363 kb on - strand, within Dshi_0632at 630.418 kb on - strand, within Dshi_0632at 630.531 kb on + strand, within Dshi_0632at 630.724 kb on + strand, within Dshi_0632at 630.724 kb on + strand, within Dshi_0632at 630.863 kb on + strand, within Dshi_0632at 630.868 kb on + strandat 630.882 kb on + strandat 631.209 kb on - strand, within Dshi_0633at 631.243 kb on - strand, within Dshi_0633at 631.388 kb on + strand, within Dshi_0633at 631.388 kb on + strand, within Dshi_0633at 631.441 kb on - strand, within Dshi_0633at 631.491 kb on - strand, within Dshi_0633at 631.494 kb on + strand, within Dshi_0633at 631.501 kb on - strand, within Dshi_0633at 631.578 kb on + strand, within Dshi_0633at 631.647 kb on + strand, within Dshi_0633at 631.653 kb on + strand, within Dshi_0633at 631.815 kb on - strand, within Dshi_0633at 631.876 kb on + strand, within Dshi_0633at 631.928 kb on - strand, within Dshi_0633at 631.986 kb on - strand, within Dshi_0633at 632.122 kb on - strand, within Dshi_0633at 632.157 kb on - strand, within Dshi_0633at 632.287 kb on + strandat 632.287 kb on + strandat 632.336 kb on + strandat 632.336 kb on + strandat 632.344 kb on - strandat 632.344 kb on - strandat 632.344 kb on - strandat 632.356 kb on - strandat 632.413 kb on + strandat 632.446 kb on + strandat 632.545 kb on + strandat 632.621 kb on - strandat 632.655 kb on - strandat 632.677 kb on + strandat 632.700 kb on - strand, within Dshi_0634at 632.756 kb on - strand, within Dshi_0634at 632.798 kb on - strand, within Dshi_0634at 632.921 kb on - strand, within Dshi_0634at 632.947 kb on + strand, within Dshi_0634at 632.996 kb on - strand, within Dshi_0634at 633.037 kb on + strand, within Dshi_0634at 633.202 kb on - strand, within Dshi_0634at 633.212 kb on - strand, within Dshi_0634

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 200 mM
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630,151 - Dshi_0632 0.28 +1.4
630,199 - Dshi_0632 0.32 +0.5
630,221 + Dshi_0632 0.34 +0.8
630,236 - Dshi_0632 0.35 -0.9
630,363 - Dshi_0632 0.46 +0.3
630,418 - Dshi_0632 0.51 +0.5
630,531 + Dshi_0632 0.61 -0.4
630,724 + Dshi_0632 0.78 -0.3
630,724 + Dshi_0632 0.78 -0.6
630,863 + Dshi_0632 0.90 -0.0
630,868 + +2.2
630,882 + -0.3
631,209 - Dshi_0633 0.16 +2.2
631,243 - Dshi_0633 0.19 -0.6
631,388 + Dshi_0633 0.29 -0.0
631,388 + Dshi_0633 0.29 +0.1
631,441 - Dshi_0633 0.33 -0.6
631,491 - Dshi_0633 0.36 -0.4
631,494 + Dshi_0633 0.37 -0.6
631,501 - Dshi_0633 0.37 +0.2
631,578 + Dshi_0633 0.42 -1.2
631,647 + Dshi_0633 0.47 +0.6
631,653 + Dshi_0633 0.48 -0.2
631,815 - Dshi_0633 0.59 -0.2
631,876 + Dshi_0633 0.63 -1.7
631,928 - Dshi_0633 0.67 -1.2
631,986 - Dshi_0633 0.71 -0.2
632,122 - Dshi_0633 0.81 +0.1
632,157 - Dshi_0633 0.83 -2.5
632,287 + -0.4
632,287 + +0.3
632,336 + -1.0
632,336 + -0.7
632,344 - +0.9
632,344 - +0.1
632,344 - -0.2
632,356 - -1.0
632,413 + +0.2
632,446 + +0.3
632,545 + -1.0
632,621 - -1.3
632,655 - -0.4
632,677 + -0.2
632,700 - Dshi_0634 0.13 -0.5
632,756 - Dshi_0634 0.20 -2.0
632,798 - Dshi_0634 0.25 +0.1
632,921 - Dshi_0634 0.40 -0.5
632,947 + Dshi_0634 0.43 -0.3
632,996 - Dshi_0634 0.49 +0.2
633,037 + Dshi_0634 0.54 +0.8
633,202 - Dshi_0634 0.75 -0.2
633,212 - Dshi_0634 0.76 -1.2

Or see this region's nucleotide sequence