Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0346 and Dshi_0347 are separated by 1 nucleotides Dshi_0347 and Dshi_0348 are separated by 28 nucleotides Dshi_0348 and Dshi_0349 are separated by 41 nucleotides Dshi_0349 and Dshi_0350 are separated by 120 nucleotides
Dshi_0346: Dshi_0346 - protein of unknown function DUF55 (RefSeq), at 332,071 to 332,535
_0346
Dshi_0347: Dshi_0347 - cob(II)yrinic acid a,c-diamide reductase (RefSeq), at 332,537 to 333,166
_0347
Dshi_0348: Dshi_0348 - ribosomal protein S16 (RefSeq), at 333,195 to 333,587
_0348
Dshi_0349: Dshi_0349 - chorismate mutase (RefSeq), at 333,629 to 333,925
_0349
Dshi_0350: Dshi_0350 - hypothetical protein (RefSeq), at 334,046 to 334,651
_0350
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.314 kb on + strand, within Dshi_0346 at 332.407 kb on - strand, within Dshi_0346 at 332.419 kb on - strand, within Dshi_0346 at 332.621 kb on - strand, within Dshi_0347 at 332.636 kb on - strand, within Dshi_0347 at 332.724 kb on + strand, within Dshi_0347 at 332.724 kb on + strand, within Dshi_0347 at 332.769 kb on + strand, within Dshi_0347 at 332.804 kb on + strand, within Dshi_0347 at 332.881 kb on - strand, within Dshi_0347 at 333.077 kb on + strand, within Dshi_0347 at 333.282 kb on + strand, within Dshi_0348
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 332,314 + Dshi_0346 0.52 -1.8 332,407 - Dshi_0346 0.72 -2.4 332,419 - Dshi_0346 0.75 +0.8 332,621 - Dshi_0347 0.13 +0.3 332,636 - Dshi_0347 0.16 -1.7 332,724 + Dshi_0347 0.30 -2.4 332,724 + Dshi_0347 0.30 -0.7 332,769 + Dshi_0347 0.37 -1.9 332,804 + Dshi_0347 0.42 +2.3 332,881 - Dshi_0347 0.55 -1.6 333,077 + Dshi_0347 0.86 -0.8 333,282 + Dshi_0348 0.22 +0.7
Or see this region's nucleotide sequence