Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0315 and Dshi_0316 overlap by 4 nucleotides Dshi_0316 and Dshi_0317 overlap by 4 nucleotides
Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564
_0315
Dshi_0316: Dshi_0316 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 304,561 to 305,241
_0316
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 303.672 kb on - strand, within Dshi_0315 at 303.837 kb on - strand, within Dshi_0315 at 303.981 kb on - strand, within Dshi_0315 at 304.212 kb on - strand, within Dshi_0315 at 304.500 kb on + strand at 304.508 kb on - strand at 304.513 kb on + strand at 304.676 kb on - strand, within Dshi_0316 at 304.712 kb on - strand, within Dshi_0316 at 304.814 kb on + strand, within Dshi_0316 at 304.898 kb on - strand, within Dshi_0316 at 304.921 kb on + strand, within Dshi_0316 at 305.017 kb on - strand, within Dshi_0316 at 305.025 kb on + strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.111 kb on + strand, within Dshi_0316 at 305.149 kb on - strand, within Dshi_0316 at 305.150 kb on + strand, within Dshi_0316 at 305.176 kb on + strand at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 303,672 - Dshi_0315 0.15 -2.8 303,837 - Dshi_0315 0.30 +4.3 303,981 - Dshi_0315 0.44 -1.7 304,212 - Dshi_0315 0.66 -0.7 304,500 + +0.0 304,508 - -0.6 304,513 + -2.0 304,676 - Dshi_0316 0.17 -0.7 304,712 - Dshi_0316 0.22 -0.4 304,814 + Dshi_0316 0.37 -0.3 304,898 - Dshi_0316 0.49 -0.4 304,921 + Dshi_0316 0.53 +1.5 305,017 - Dshi_0316 0.67 +0.3 305,025 + Dshi_0316 0.68 -2.8 305,033 - Dshi_0316 0.69 -0.8 305,033 - Dshi_0316 0.69 -2.0 305,111 + Dshi_0316 0.81 -2.7 305,149 - Dshi_0316 0.86 +0.2 305,150 + Dshi_0316 0.86 +0.1 305,176 + +1.2 305,936 + -0.8 305,948 + -0.0 305,948 + +0.2 305,948 + -2.6 305,948 + +1.9 305,948 + -0.6 305,948 + -2.2 305,948 + -0.5 305,948 + +0.4 305,948 + +1.1 305,948 + +0.6 305,948 + -1.0 305,948 + -2.0 305,948 + -2.3 305,948 + -0.9 305,948 + +1.8 305,948 + -0.1 305,948 + -0.7 305,948 + -0.7 305,948 + -0.4 305,948 + -2.4 305,948 + +0.0 305,948 + -0.6 305,948 + -1.0 305,948 + +1.8 305,948 + -0.8 305,948 + -1.5 305,956 - -1.3 305,956 - -0.9 305,956 - +0.7 305,956 - -0.5 305,956 - +0.2 305,956 - +1.3 305,956 - +1.0 305,956 - +1.1 305,956 - +0.2 305,956 - +0.3 305,956 - -1.4 305,956 - +0.7 305,956 - +1.7 305,956 - -0.6 305,956 - +0.3 305,956 - -0.0 305,956 - -0.0 305,956 - +1.3 305,956 - -1.2 305,956 - +2.1 306,024 - -2.2 306,034 - -1.8 306,046 - -0.4 306,075 + +1.1 306,075 + -0.0 306,123 + -2.0 306,140 - -2.8 306,152 - -0.4 306,200 + -2.1 306,200 + +0.1 306,200 + -0.1 306,200 + -0.3 306,200 + -0.1 306,208 - +1.5 306,208 - +0.6 306,208 - +1.0 306,208 - +1.4 306,208 - -1.3 306,217 - +2.7 306,220 - -0.4 306,221 + -2.0
Or see this region's nucleotide sequence