Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0176 and Dshi_0177 are separated by 60 nucleotides Dshi_0177 and Dshi_0178 are separated by 3 nucleotides Dshi_0178 and Dshi_0179 are separated by 73 nucleotides Dshi_0179 and Dshi_0180 are separated by 72 nucleotides
Dshi_0176: Dshi_0176 - precorrin-4 C11-methyltransferase (RefSeq), at 180,607 to 181,383
_0176
Dshi_0177: Dshi_0177 - hypothetical protein (RefSeq), at 181,444 to 181,797
_0177
Dshi_0178: Dshi_0178 - aminotransferase class I and II (RefSeq), at 181,801 to 182,973
_0178
Dshi_0179: Dshi_0179 - peptide deformylase (RefSeq), at 183,047 to 183,610
_0179
Dshi_0180: Dshi_0180 - peptide deformylase (RefSeq), at 183,683 to 184,189
_0180
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 181.416 kb on + strand at 181.696 kb on - strand, within Dshi_0177 at 181.908 kb on + strand at 181.916 kb on - strand at 181.979 kb on - strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.351 kb on - strand, within Dshi_0178 at 182.361 kb on - strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.530 kb on + strand, within Dshi_0178 at 182.539 kb on - strand at 182.539 kb on - strand, within Dshi_0178 at 182.563 kb on + strand, within Dshi_0178 at 182.609 kb on + strand, within Dshi_0178 at 182.668 kb on + strand, within Dshi_0178 at 182.730 kb on - strand, within Dshi_0178 at 182.770 kb on + strand, within Dshi_0178 at 182.874 kb on + strand at 182.939 kb on + strand at 182.947 kb on - strand at 182.968 kb on + strand at 182.976 kb on - strand at 182.988 kb on - strand at 183.760 kb on + strand, within Dshi_0180 at 183.827 kb on + strand, within Dshi_0180 at 183.959 kb on - strand, within Dshi_0180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 181,416 + -0.5 181,696 - Dshi_0177 0.71 -0.4 181,908 + -0.7 181,916 - -1.8 181,979 - Dshi_0178 0.15 -0.2 182,002 + Dshi_0178 0.17 -2.0 182,002 + Dshi_0178 0.17 -0.4 182,351 - Dshi_0178 0.47 +0.3 182,361 - Dshi_0178 0.48 -1.3 182,438 + Dshi_0178 0.54 +0.1 182,438 + Dshi_0178 0.54 -0.5 182,530 + Dshi_0178 0.62 +0.4 182,539 - -0.1 182,539 - Dshi_0178 0.63 -3.1 182,563 + Dshi_0178 0.65 -0.9 182,609 + Dshi_0178 0.69 +0.8 182,668 + Dshi_0178 0.74 +0.1 182,730 - Dshi_0178 0.79 +0.0 182,770 + Dshi_0178 0.83 +1.8 182,874 + -0.5 182,939 + +1.8 182,947 - +0.8 182,968 + +0.0 182,976 - -1.6 182,988 - -0.4 183,760 + Dshi_0180 0.15 +1.1 183,827 + Dshi_0180 0.28 +2.7 183,959 - Dshi_0180 0.54 -1.0
Or see this region's nucleotide sequence