Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0167 and Dshi_0168 are separated by 278 nucleotides Dshi_0168 and Dshi_0169 are separated by 101 nucleotides Dshi_0169 and Dshi_0170 are separated by 335 nucleotides Dshi_0170 and Dshi_0171 overlap by 4 nucleotides
Dshi_0167: Dshi_0167 - protein of unknown function DUF1636 (RefSeq), at 171,226 to 171,609
_0167
Dshi_0168: Dshi_0168 - response regulator receiver protein (RefSeq), at 171,888 to 172,247
_0168
Dshi_0169: Dshi_0169 - putative glutathione S-transferase (RefSeq), at 172,349 to 173,338
_0169
Dshi_0170: Dshi_0170 - hypothetical protein (RefSeq), at 173,674 to 173,919
_0170
Dshi_0171: Dshi_0171 - cobalamin (vitamin B12) biosynthesis CbiX protein (RefSeq), at 173,916 to 175,166
_0171
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 171.406 kb on - strand, within Dshi_0167 at 171.446 kb on + strand, within Dshi_0167 at 171.506 kb on + strand, within Dshi_0167 at 171.618 kb on + strand at 171.618 kb on + strand at 171.625 kb on + strand at 171.625 kb on + strand at 171.628 kb on - strand at 171.641 kb on - strand at 171.651 kb on - strand at 171.656 kb on - strand at 171.666 kb on + strand at 171.671 kb on + strand at 171.680 kb on + strand at 171.709 kb on + strand at 171.717 kb on - strand at 171.717 kb on - strand at 171.717 kb on - strand at 171.800 kb on - strand at 171.820 kb on + strand at 171.823 kb on - strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.826 kb on + strand at 171.828 kb on + strand at 171.828 kb on + strand at 171.828 kb on + strand at 171.830 kb on + strand at 171.830 kb on + strand at 171.830 kb on + strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.836 kb on - strand at 171.838 kb on - strand at 171.839 kb on - strand at 171.844 kb on - strand at 171.849 kb on - strand at 171.859 kb on - strand at 171.901 kb on - strand at 171.924 kb on + strand, within Dshi_0168 at 171.924 kb on + strand, within Dshi_0168 at 171.944 kb on + strand, within Dshi_0168 at 171.944 kb on + strand, within Dshi_0168 at 171.955 kb on + strand, within Dshi_0168 at 172.004 kb on + strand, within Dshi_0168 at 172.012 kb on - strand, within Dshi_0168 at 172.012 kb on - strand, within Dshi_0168 at 172.012 kb on - strand, within Dshi_0168 at 172.022 kb on - strand, within Dshi_0168 at 172.047 kb on - strand, within Dshi_0168 at 172.047 kb on - strand, within Dshi_0168 at 172.058 kb on - strand, within Dshi_0168 at 172.060 kb on + strand, within Dshi_0168 at 172.164 kb on - strand, within Dshi_0168 at 172.173 kb on - strand, within Dshi_0168 at 172.186 kb on + strand, within Dshi_0168 at 172.190 kb on + strand, within Dshi_0168 at 172.209 kb on + strand, within Dshi_0168 at 172.217 kb on - strand at 172.223 kb on + strand at 172.229 kb on + strand at 172.241 kb on + strand at 172.241 kb on + strand at 172.241 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.279 kb on - strand at 172.279 kb on - strand at 172.279 kb on - strand at 172.284 kb on - strand at 172.296 kb on - strand at 172.349 kb on - strand at 172.349 kb on - strand at 172.381 kb on + strand at 172.381 kb on + strand at 172.381 kb on + strand at 172.381 kb on - strand at 172.434 kb on - strand at 172.435 kb on + strand at 172.445 kb on + strand at 172.476 kb on - strand, within Dshi_0169 at 172.500 kb on + strand, within Dshi_0169 at 172.510 kb on + strand, within Dshi_0169 at 172.518 kb on - strand, within Dshi_0169 at 172.518 kb on - strand, within Dshi_0169 at 172.523 kb on + strand, within Dshi_0169 at 172.524 kb on + strand, within Dshi_0169 at 172.524 kb on + strand, within Dshi_0169 at 172.524 kb on + strand, within Dshi_0169 at 172.525 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.532 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.563 kb on + strand, within Dshi_0169 at 172.586 kb on - strand, within Dshi_0169 at 172.613 kb on - strand, within Dshi_0169 at 172.613 kb on - strand, within Dshi_0169 at 172.627 kb on - strand, within Dshi_0169 at 172.669 kb on + strand, within Dshi_0169 at 172.669 kb on + strand, within Dshi_0169 at 172.677 kb on - strand, within Dshi_0169 at 172.680 kb on + strand, within Dshi_0169 at 172.680 kb on + strand, within Dshi_0169 at 172.683 kb on - strand, within Dshi_0169 at 172.685 kb on + strand, within Dshi_0169 at 172.685 kb on + strand, within Dshi_0169 at 172.685 kb on + strand, within Dshi_0169 at 172.685 kb on + strand, within Dshi_0169 at 172.693 kb on - strand, within Dshi_0169 at 172.693 kb on - strand, within Dshi_0169 at 172.693 kb on - strand, within Dshi_0169 at 172.693 kb on - strand, within Dshi_0169 at 172.693 kb on - strand, within Dshi_0169 at 172.693 kb on - strand, within Dshi_0169 at 172.718 kb on + strand, within Dshi_0169 at 172.776 kb on + strand, within Dshi_0169 at 172.779 kb on - strand, within Dshi_0169 at 172.784 kb on - strand, within Dshi_0169 at 172.811 kb on + strand, within Dshi_0169 at 172.845 kb on + strand, within Dshi_0169 at 172.853 kb on - strand, within Dshi_0169 at 172.920 kb on + strand, within Dshi_0169 at 172.929 kb on - strand, within Dshi_0169 at 172.934 kb on - strand, within Dshi_0169 at 172.960 kb on + strand, within Dshi_0169 at 172.960 kb on + strand, within Dshi_0169 at 172.968 kb on - strand, within Dshi_0169 at 173.004 kb on + strand, within Dshi_0169 at 173.056 kb on - strand, within Dshi_0169 at 173.101 kb on + strand, within Dshi_0169 at 173.147 kb on + strand, within Dshi_0169 at 173.155 kb on - strand, within Dshi_0169 at 173.161 kb on - strand, within Dshi_0169 at 173.228 kb on + strand, within Dshi_0169 at 173.319 kb on + strand at 173.327 kb on + strand at 173.327 kb on + strand at 173.380 kb on - strand at 173.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 171,406 - Dshi_0167 0.47 +0.4 171,446 + Dshi_0167 0.57 +1.9 171,506 + Dshi_0167 0.73 +1.2 171,618 + +0.8 171,618 + +1.4 171,625 + -0.5 171,625 + +0.3 171,628 - -0.6 171,641 - -0.0 171,651 - +0.6 171,656 - +0.1 171,666 + -0.6 171,671 + +0.2 171,680 + -0.9 171,709 + -0.6 171,717 - +2.4 171,717 - +0.2 171,717 - -0.1 171,800 - +0.1 171,820 + +2.1 171,823 - -0.5 171,825 + +0.0 171,825 + -0.7 171,825 + -0.6 171,825 + +1.6 171,825 + +0.4 171,825 + -2.6 171,825 + -0.5 171,825 + -0.2 171,825 + -1.7 171,825 + -0.6 171,825 + -0.0 171,825 + -0.1 171,825 + +0.6 171,825 + +0.1 171,825 + -0.2 171,825 + +1.4 171,825 + -0.4 171,825 + +0.0 171,825 + -0.8 171,825 + +0.4 171,825 + +0.4 171,825 + +0.5 171,825 + -0.5 171,825 + -1.8 171,825 + +0.9 171,826 + -1.2 171,828 + -1.5 171,828 + +1.4 171,828 + +0.1 171,830 + +0.7 171,830 + -0.2 171,830 + +0.8 171,833 - -1.8 171,833 - -0.3 171,833 - +0.3 171,833 - +2.6 171,833 - -0.6 171,833 - +0.4 171,833 - -0.1 171,833 - +0.6 171,833 - +3.9 171,833 - +2.4 171,833 - +0.0 171,833 - +1.4 171,833 - -0.6 171,833 - -0.9 171,833 - -1.0 171,833 - -1.0 171,833 - -0.6 171,833 - -1.7 171,833 - +0.2 171,833 - +0.7 171,833 - -0.0 171,833 - -1.0 171,836 - -2.3 171,838 - -0.7 171,839 - +1.1 171,844 - -0.3 171,849 - +0.6 171,859 - +1.6 171,901 - +0.7 171,924 + Dshi_0168 0.10 -0.0 171,924 + Dshi_0168 0.10 -0.0 171,944 + Dshi_0168 0.16 -0.9 171,944 + Dshi_0168 0.16 -0.1 171,955 + Dshi_0168 0.19 -0.1 172,004 + Dshi_0168 0.32 -0.2 172,012 - Dshi_0168 0.34 -0.3 172,012 - Dshi_0168 0.34 -0.6 172,012 - Dshi_0168 0.34 -0.1 172,022 - Dshi_0168 0.37 +0.5 172,047 - Dshi_0168 0.44 -1.1 172,047 - Dshi_0168 0.44 -0.1 172,058 - Dshi_0168 0.47 +0.8 172,060 + Dshi_0168 0.48 +1.4 172,164 - Dshi_0168 0.77 +0.6 172,173 - Dshi_0168 0.79 -1.0 172,186 + Dshi_0168 0.83 +0.2 172,190 + Dshi_0168 0.84 -0.7 172,209 + Dshi_0168 0.89 +0.3 172,217 - -0.6 172,223 + +0.8 172,229 + -0.1 172,241 + +0.8 172,241 + +1.3 172,241 + -1.8 172,271 + +0.9 172,271 + -0.5 172,271 + +0.6 172,271 + -0.2 172,271 + -0.4 172,271 + +0.1 172,279 - +0.0 172,279 - -1.3 172,279 - -1.0 172,284 - -0.4 172,296 - +0.2 172,349 - +1.2 172,349 - -0.1 172,381 + +0.9 172,381 + -1.9 172,381 + -0.1 172,381 - +0.5 172,434 - -0.5 172,435 + -0.0 172,445 + -1.5 172,476 - Dshi_0169 0.13 +0.0 172,500 + Dshi_0169 0.15 -1.0 172,510 + Dshi_0169 0.16 -0.2 172,518 - Dshi_0169 0.17 +0.1 172,518 - Dshi_0169 0.17 +1.0 172,523 + Dshi_0169 0.18 +1.8 172,524 + Dshi_0169 0.18 +0.6 172,524 + Dshi_0169 0.18 +0.9 172,524 + Dshi_0169 0.18 -0.3 172,525 + Dshi_0169 0.18 +0.5 172,531 + Dshi_0169 0.18 -0.6 172,531 + Dshi_0169 0.18 -0.3 172,531 + Dshi_0169 0.18 -1.1 172,531 + Dshi_0169 0.18 +0.5 172,531 + Dshi_0169 0.18 -0.3 172,531 + Dshi_0169 0.18 -0.2 172,531 + Dshi_0169 0.18 +0.0 172,531 + Dshi_0169 0.18 -0.2 172,532 - Dshi_0169 0.18 -1.3 172,539 - Dshi_0169 0.19 -0.7 172,539 - Dshi_0169 0.19 -0.6 172,539 - Dshi_0169 0.19 -0.2 172,539 - Dshi_0169 0.19 -0.4 172,539 - Dshi_0169 0.19 +0.6 172,539 - Dshi_0169 0.19 +0.6 172,563 + Dshi_0169 0.22 -0.0 172,586 - Dshi_0169 0.24 +0.4 172,613 - Dshi_0169 0.27 -3.1 172,613 - Dshi_0169 0.27 -1.1 172,627 - Dshi_0169 0.28 +0.0 172,669 + Dshi_0169 0.32 -0.7 172,669 + Dshi_0169 0.32 +0.1 172,677 - Dshi_0169 0.33 +0.6 172,680 + Dshi_0169 0.33 -0.8 172,680 + Dshi_0169 0.33 -1.5 172,683 - Dshi_0169 0.34 +1.2 172,685 + Dshi_0169 0.34 -0.5 172,685 + Dshi_0169 0.34 -0.5 172,685 + Dshi_0169 0.34 -0.2 172,685 + Dshi_0169 0.34 -0.2 172,693 - Dshi_0169 0.35 -1.1 172,693 - Dshi_0169 0.35 +0.4 172,693 - Dshi_0169 0.35 -1.2 172,693 - Dshi_0169 0.35 -2.1 172,693 - Dshi_0169 0.35 -1.2 172,693 - Dshi_0169 0.35 -1.7 172,718 + Dshi_0169 0.37 -1.6 172,776 + Dshi_0169 0.43 -0.1 172,779 - Dshi_0169 0.43 -0.8 172,784 - Dshi_0169 0.44 +0.2 172,811 + Dshi_0169 0.47 +0.1 172,845 + Dshi_0169 0.50 -1.3 172,853 - Dshi_0169 0.51 -0.6 172,920 + Dshi_0169 0.58 -1.3 172,929 - Dshi_0169 0.59 -2.1 172,934 - Dshi_0169 0.59 -0.6 172,960 + Dshi_0169 0.62 +0.0 172,960 + Dshi_0169 0.62 -0.0 172,968 - Dshi_0169 0.63 -0.8 173,004 + Dshi_0169 0.66 -1.4 173,056 - Dshi_0169 0.71 +0.1 173,101 + Dshi_0169 0.76 -0.7 173,147 + Dshi_0169 0.81 +0.1 173,155 - Dshi_0169 0.81 -0.8 173,161 - Dshi_0169 0.82 -0.1 173,228 + Dshi_0169 0.89 -0.1 173,319 + -0.6 173,327 + +0.2 173,327 + -0.2 173,380 - -0.4 173,423 - -1.0
Or see this region's nucleotide sequence