Experiment: m.b. acetate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0904 and Dshi_5007 are separated by 192 nucleotides Dshi_5007 and Dshi_0905 are separated by 13 nucleotides Dshi_0905 and Dshi_0906 overlap by 4 nucleotides
Dshi_0904: Dshi_0904 - hypothetical protein (RefSeq), at 927,835 to 928,704
_0904
Dshi_5007: Dshi_5007 - hypothetical protein (RefSeq), at 928,897 to 929,556
_5007
Dshi_0905: Dshi_0905 - protein of unknown function UPF0126 (RefSeq), at 929,570 to 930,199
_0905
Dshi_0906: Dshi_0906 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 930,196 to 930,930
_0906
Position (kb) 928
929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 927.935 kb on - strand, within Dshi_0904 at 927.991 kb on - strand, within Dshi_0904 at 928.025 kb on - strand, within Dshi_0904 at 928.073 kb on - strand, within Dshi_0904 at 928.094 kb on + strand, within Dshi_0904 at 928.102 kb on - strand, within Dshi_0904 at 928.130 kb on + strand, within Dshi_0904 at 928.134 kb on + strand, within Dshi_0904 at 928.173 kb on + strand, within Dshi_0904 at 928.236 kb on - strand, within Dshi_0904 at 928.332 kb on + strand, within Dshi_0904 at 928.487 kb on + strand, within Dshi_0904 at 928.533 kb on - strand, within Dshi_0904 at 928.559 kb on + strand, within Dshi_0904 at 928.629 kb on + strand at 928.679 kb on + strand at 928.686 kb on - strand at 928.686 kb on - strand at 928.711 kb on + strand at 928.757 kb on + strand at 928.793 kb on - strand at 928.818 kb on + strand at 929.245 kb on - strand, within Dshi_5007 at 929.383 kb on - strand, within Dshi_5007 at 929.550 kb on + strand at 929.580 kb on + strand at 929.679 kb on + strand, within Dshi_0905 at 929.684 kb on + strand, within Dshi_0905 at 930.151 kb on + strand at 930.151 kb on + strand at 930.159 kb on - strand at 930.252 kb on + strand at 930.299 kb on + strand, within Dshi_0906 at 930.350 kb on - strand, within Dshi_0906 at 930.374 kb on + strand, within Dshi_0906 at 930.474 kb on + strand, within Dshi_0906
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 200 mM remove 927,935 - Dshi_0904 0.11 +2.3 927,991 - Dshi_0904 0.18 -1.2 928,025 - Dshi_0904 0.22 -2.7 928,073 - Dshi_0904 0.27 -0.4 928,094 + Dshi_0904 0.30 +0.4 928,102 - Dshi_0904 0.31 -2.2 928,130 + Dshi_0904 0.34 -3.9 928,134 + Dshi_0904 0.34 +0.3 928,173 + Dshi_0904 0.39 +2.6 928,236 - Dshi_0904 0.46 -0.8 928,332 + Dshi_0904 0.57 -0.8 928,487 + Dshi_0904 0.75 +0.0 928,533 - Dshi_0904 0.80 +0.1 928,559 + Dshi_0904 0.83 +0.3 928,629 + +0.7 928,679 + +0.8 928,686 - +0.4 928,686 - +1.2 928,711 + -1.2 928,757 + -3.3 928,793 - +1.2 928,818 + -1.4 929,245 - Dshi_5007 0.53 -1.5 929,383 - Dshi_5007 0.74 -2.1 929,550 + -0.2 929,580 + +0.3 929,679 + Dshi_0905 0.17 -1.0 929,684 + Dshi_0905 0.18 +0.1 930,151 + -1.1 930,151 + +1.9 930,159 - -0.7 930,252 + -0.8 930,299 + Dshi_0906 0.14 -0.3 930,350 - Dshi_0906 0.21 +0.5 930,374 + Dshi_0906 0.24 -1.2 930,474 + Dshi_0906 0.38 -0.1
Or see this region's nucleotide sequence