Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4156 and Dshi_4157 are separated by 148 nucleotides Dshi_4157 and Dshi_4158 are separated by 78 nucleotides Dshi_4158 and Dshi_4159 are separated by 121 nucleotides
Dshi_4156: Dshi_4156 - GAF modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,936 to 3,684
_4156
Dshi_4157: Dshi_4157 - monooxygenase protein, putative (RefSeq), at 3,833 to 5,632
_4157
Dshi_4158: Dshi_4158 - acetoin reductase (RefSeq), at 5,711 to 6,484
_4158
Dshi_4159: Dshi_4159 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 6,606 to 7,658
_4159
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.048 kb on - strand, within Dshi_4156 at 3.129 kb on - strand, within Dshi_4156 at 3.159 kb on - strand, within Dshi_4156 at 3.383 kb on + strand, within Dshi_4156 at 3.497 kb on - strand, within Dshi_4156 at 3.626 kb on - strand at 3.681 kb on - strand at 3.857 kb on - strand at 3.976 kb on + strand at 4.027 kb on + strand, within Dshi_4157 at 4.150 kb on - strand, within Dshi_4157 at 4.480 kb on + strand, within Dshi_4157 at 4.488 kb on - strand, within Dshi_4157 at 4.501 kb on - strand, within Dshi_4157 at 4.560 kb on + strand, within Dshi_4157 at 4.568 kb on - strand, within Dshi_4157 at 4.703 kb on - strand, within Dshi_4157 at 4.754 kb on + strand, within Dshi_4157 at 4.762 kb on - strand, within Dshi_4157 at 4.765 kb on + strand, within Dshi_4157 at 4.783 kb on - strand, within Dshi_4157 at 4.884 kb on - strand, within Dshi_4157 at 4.952 kb on + strand at 4.974 kb on + strand, within Dshi_4157 at 5.157 kb on + strand, within Dshi_4157 at 5.165 kb on - strand, within Dshi_4157 at 5.253 kb on + strand, within Dshi_4157 at 5.386 kb on + strand, within Dshi_4157 at 5.410 kb on + strand, within Dshi_4157 at 5.433 kb on + strand, within Dshi_4157 at 5.722 kb on + strand at 5.722 kb on + strand at 5.730 kb on - strand at 5.934 kb on + strand, within Dshi_4158 at 6.023 kb on + strand, within Dshi_4158 at 6.064 kb on - strand, within Dshi_4158 at 6.330 kb on - strand, within Dshi_4158 at 6.571 kb on - strand at 6.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 3,048 - Dshi_4156 0.64 -0.4 3,129 - Dshi_4156 0.68 +0.9 3,159 - Dshi_4156 0.70 +3.4 3,383 + Dshi_4156 0.83 +1.8 3,497 - Dshi_4156 0.89 +2.0 3,626 - -0.7 3,681 - -0.1 3,857 - -0.2 3,976 + +0.1 4,027 + Dshi_4157 0.11 -1.3 4,150 - Dshi_4157 0.18 +1.0 4,480 + Dshi_4157 0.36 -0.4 4,488 - Dshi_4157 0.36 +3.0 4,501 - Dshi_4157 0.37 -1.4 4,560 + Dshi_4157 0.40 -0.3 4,568 - Dshi_4157 0.41 +1.1 4,703 - Dshi_4157 0.48 -1.3 4,754 + Dshi_4157 0.51 -1.2 4,762 - Dshi_4157 0.52 +0.5 4,765 + Dshi_4157 0.52 +0.1 4,783 - Dshi_4157 0.53 -0.5 4,884 - Dshi_4157 0.58 -0.2 4,952 + +1.1 4,974 + Dshi_4157 0.63 +3.0 5,157 + Dshi_4157 0.74 +1.1 5,165 - Dshi_4157 0.74 +2.1 5,253 + Dshi_4157 0.79 -1.5 5,386 + Dshi_4157 0.86 +0.0 5,410 + Dshi_4157 0.88 +0.8 5,433 + Dshi_4157 0.89 -0.7 5,722 + +1.1 5,722 + -0.9 5,730 - +1.1 5,934 + Dshi_4158 0.29 +1.5 6,023 + Dshi_4158 0.40 +0.8 6,064 - Dshi_4158 0.46 -0.9 6,330 - Dshi_4158 0.80 -0.9 6,571 - -2.9 6,586 + -0.1
Or see this region's nucleotide sequence