Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3433

Experiment: m.b. Cholin acetate 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cholin acetate 40 mM
3,613,539	+				+1.0
3,613,547	-				-0.1
3,613,547	-				+0.2
3,613,547	-				+0.1
3,613,547	-				+0.2
3,613,550	-				-0.1
3,613,552	-				-0.8
3,613,556	+				-0.7
3,613,564	-				+0.9
3,613,584	-				-0.1
3,613,590	+				+0.1
3,613,598	-				-1.1
3,613,598	-				+0.1
3,613,598	-				-1.0
3,613,602	-				-0.7
3,613,617	-				+0.1
3,613,618	-				-0.3
3,613,619	+				-0.3
3,613,620	+				-0.3
3,613,620	+				-0.9
3,613,620	+				+1.7
3,613,620	+				-0.5
3,613,620	+				-1.6
3,613,620	+				+0.0
3,613,627	-				+0.3
3,613,628	-				-0.5
3,613,628	-				+0.6
3,613,676	+				+1.4
3,613,676	+				-0.3
3,613,683	+				-0.1
3,613,683	+				-0.4
3,613,684	-				+0.7
3,613,690	-				-1.5
3,613,691	+				-1.0
3,613,750	+				-0.9
3,613,755	-				+0.4
3,613,782	+				-0.6
3,613,783	-				-0.2
3,613,788	+				-0.8
3,613,788	+				-2.0
3,613,788	+				+0.5
3,613,788	+				-5.0
3,613,788	+				-0.3
3,613,788	+				+0.3
3,613,788	+				-0.3
3,613,788	+				-0.4
3,613,788	+				+0.6
3,613,788	+				+0.1
3,613,788	+				+1.1
3,613,788	+				+1.0
3,613,788	+				+0.1
3,613,793	+				+1.1
3,613,796	-				-0.2
3,613,796	-				-0.0
3,613,796	-				-0.2
3,613,796	-				-0.3
3,613,796	-				-0.3
3,613,796	-				+0.4
3,613,796	-				+0.7
3,613,796	-				+0.5
3,613,796	-				-0.1
3,613,796	-				-0.7
3,613,796	-				+0.5
3,613,796	-				-0.3
3,613,796	-				-1.8
3,613,796	-				+0.5
3,613,796	-				-1.5
3,613,802	+		Dshi_3433	0.10	+0.5
3,613,804	-		Dshi_3433	0.10	-1.3
3,613,827	+		Dshi_3433	0.12	-0.0
3,613,827	+		Dshi_3433	0.12	+0.0
3,613,827	+		Dshi_3433	0.12	-0.7
3,613,827	+		Dshi_3433	0.12	+0.9
3,613,827	+		Dshi_3433	0.12	+0.4
3,613,827	+		Dshi_3433	0.12	+0.0
3,613,827	+		Dshi_3433	0.12	+0.5
3,613,827	+		Dshi_3433	0.12	+0.3
3,613,835	-		Dshi_3433	0.13	-1.9
3,613,835	-		Dshi_3433	0.13	-0.8
3,613,835	-		Dshi_3433	0.13	-0.6
3,613,835	-		Dshi_3433	0.13	-0.7
3,613,835	-		Dshi_3433	0.13	-0.6
3,613,835	-		Dshi_3433	0.13	-0.1
3,613,835	-		Dshi_3433	0.13	-1.6
3,613,837	+		Dshi_3433	0.13	-0.2
3,613,837	+		Dshi_3433	0.13	-1.0
3,613,837	+		Dshi_3433	0.13	-1.8
3,613,839	+		Dshi_3433	0.13	+0.1
3,613,840	-		Dshi_3433	0.13	-0.2
3,613,840	-		Dshi_3433	0.13	+0.3
3,613,845	-		Dshi_3433	0.13	-1.1
3,613,845	-		Dshi_3433	0.13	-0.2
3,613,845	-		Dshi_3433	0.13	+0.1
3,613,847	-		Dshi_3433	0.14	-0.3
3,613,849	+		Dshi_3433	0.14	+1.9
3,613,852	-		Dshi_3433	0.14	-0.7
3,613,878	+		Dshi_3433	0.16	+0.5
3,613,880	+		Dshi_3433	0.16	+0.4
3,613,887	+		Dshi_3433	0.17	-1.5
3,613,888	-		Dshi_3433	0.17	-0.1
3,613,892	+		Dshi_3433	0.17	-0.1
3,613,892	+		Dshi_3433	0.17	+0.6
3,613,892	+		Dshi_3433	0.17	-1.1
3,613,900	-		Dshi_3433	0.18	+0.5
3,613,900	-		Dshi_3433	0.18	+0.0
3,613,900	-		Dshi_3433	0.18	-0.5
3,613,900	-		Dshi_3433	0.18	+1.5
3,613,930	+		Dshi_3433	0.20	+0.2
3,613,930	+		Dshi_3433	0.20	+0.0
3,613,930	+		Dshi_3433	0.20	+0.3
3,613,933	-		Dshi_3433	0.20	+0.5
3,613,933	-		Dshi_3433	0.20	+0.6
3,613,933	-		Dshi_3433	0.20	-0.1
3,613,933	-		Dshi_3433	0.20	+0.7
3,613,933	-		Dshi_3433	0.20	+0.3
3,613,933	-		Dshi_3433	0.20	-0.8
3,613,938	-		Dshi_3433	0.21	+0.8
3,613,938	-		Dshi_3433	0.21	-0.4
3,613,950	+		Dshi_3433	0.21	-1.3
3,613,950	+		Dshi_3433	0.21	-0.1
3,613,958	-		Dshi_3433	0.22	+0.2
3,613,958	-		Dshi_3433	0.22	-1.3
3,613,972	-		Dshi_3433	0.23	-0.1
3,613,995	+		Dshi_3433	0.25	-0.4
3,614,001	+		Dshi_3433	0.25	+1.8
3,614,009	-		Dshi_3433	0.26	+0.6
3,614,009	-		Dshi_3433	0.26	-0.1
3,614,032	-		Dshi_3433	0.28	-0.1
3,614,043	+		Dshi_3433	0.29	+0.4
3,614,043	+		Dshi_3433	0.29	-0.5
3,614,043	+		Dshi_3433	0.29	+0.2
3,614,043	+		Dshi_3433	0.29	+0.1
3,614,043	+		Dshi_3433	0.29	+0.7
3,614,043	+		Dshi_3433	0.29	+1.2
3,614,043	+		Dshi_3433	0.29	+0.2
3,614,043	+		Dshi_3433	0.29	-0.8
3,614,043	+		Dshi_3433	0.29	+0.5
3,614,043	+		Dshi_3433	0.29	-0.8
3,614,043	+		Dshi_3433	0.29	-0.4
3,614,043	+		Dshi_3433	0.29	+0.1
3,614,043	+		Dshi_3433	0.29	-0.9
3,614,043	+		Dshi_3433	0.29	+0.2
3,614,043	+		Dshi_3433	0.29	+0.6
3,614,043	+		Dshi_3433	0.29	+0.2
3,614,043	+		Dshi_3433	0.29	-0.5
3,614,043	+		Dshi_3433	0.29	+0.5
3,614,043	+		Dshi_3433	0.29	+0.3
3,614,043	+		Dshi_3433	0.29	-0.3
3,614,043	+		Dshi_3433	0.29	-0.1
3,614,051	-		Dshi_3433	0.29	-0.9
3,614,051	-		Dshi_3433	0.29	-2.1
3,614,051	-		Dshi_3433	0.29	+0.6
3,614,051	-		Dshi_3433	0.29	-2.1
3,614,051	-		Dshi_3433	0.29	+0.1
3,614,051	-		Dshi_3433	0.29	-0.5
3,614,051	-		Dshi_3433	0.29	+0.4
3,614,051	-		Dshi_3433	0.29	-0.4
3,614,051	-		Dshi_3433	0.29	+0.2
3,614,051	-		Dshi_3433	0.29	-1.9
3,614,051	-		Dshi_3433	0.29	+0.6
3,614,051	-		Dshi_3433	0.29	-1.2
3,614,051	-		Dshi_3433	0.29	-0.7
3,614,051	-		Dshi_3433	0.29	+0.2
3,614,051	-		Dshi_3433	0.29	-2.9
3,614,051	-		Dshi_3433	0.29	+0.8
3,614,051	-		Dshi_3433	0.29	+0.0
3,614,051	-		Dshi_3433	0.29	+1.3
3,614,051	-		Dshi_3433	0.29	+0.6
3,614,051	-		Dshi_3433	0.29	+0.4
3,614,051	-		Dshi_3433	0.29	+0.4
3,614,051	-		Dshi_3433	0.29	-0.5
3,614,051	-		Dshi_3433	0.29	+0.2
3,614,051	-		Dshi_3433	0.29	-1.2
3,614,053	-		Dshi_3433	0.29	+1.8
3,614,070	+		Dshi_3433	0.31	+0.6
3,614,070	+		Dshi_3433	0.31	-0.1
3,614,071	+		Dshi_3433	0.31	+0.5
3,614,089	-		Dshi_3433	0.32	+0.5
3,614,097	-		Dshi_3433	0.33	+0.5
3,614,101	+		Dshi_3433	0.33	-3.3
3,614,102	+		Dshi_3433	0.33	+0.9
3,614,102	+		Dshi_3433	0.33	+0.4
3,614,102	-		Dshi_3433	0.33	-0.6
3,614,109	+		Dshi_3433	0.34	+0.8
3,614,110	-		Dshi_3433	0.34	+0.1
3,614,110	-		Dshi_3433	0.34	+0.0
3,614,110	-		Dshi_3433	0.34	-2.1
3,614,117	-		Dshi_3433	0.34	+1.2
3,614,162	-		Dshi_3433	0.38	+1.1
3,614,167	+		Dshi_3433	0.38	+0.2
3,614,169	-		Dshi_3433	0.38	+0.2
3,614,175	-		Dshi_3433	0.39	+0.7
3,614,180	-		Dshi_3433	0.39	-1.2
3,614,206	-		Dshi_3433	0.41	+2.8
3,614,259	+		Dshi_3433	0.45	+0.5
3,614,264	+		Dshi_3433	0.46	+0.2
3,614,269	+		Dshi_3433	0.46	-0.3
3,614,277	-		Dshi_3433	0.47	+0.5
3,614,282	-		Dshi_3433	0.47	+1.0
3,614,283	+		Dshi_3433	0.47	-0.3
3,614,288	+		Dshi_3433	0.47	+0.4
3,614,296	-		Dshi_3433	0.48	-2.2
3,614,298	+		Dshi_3433	0.48	+0.1
3,614,298	+		Dshi_3433	0.48	+0.4
3,614,301	-		Dshi_3433	0.48	-0.5
3,614,306	-		Dshi_3433	0.49	+0.1
3,614,321	-		Dshi_3433	0.50	-0.3
3,614,325	+		Dshi_3433	0.50	+1.1
3,614,326	+		Dshi_3433	0.50	-0.4
3,614,343	-		Dshi_3433	0.52	+0.5
3,614,374	+		Dshi_3433	0.54	+0.1
3,614,399	-		Dshi_3433	0.56	+0.6
3,614,445	+		Dshi_3433	0.59	+0.3
3,614,453	-		Dshi_3433	0.60	+0.6
3,614,467	+		Dshi_3433	0.61	+0.1
3,614,467	+		Dshi_3433	0.61	-0.1
3,614,474	+		Dshi_3433	0.62	+0.2
3,614,475	-		Dshi_3433	0.62	-1.7
3,614,482	-		Dshi_3433	0.62	+2.3
3,614,500	+		Dshi_3433	0.64	-0.5
3,614,522	+		Dshi_3433	0.65	-2.0
3,614,522	+		Dshi_3433	0.65	+0.8
3,614,522	+		Dshi_3433	0.65	-1.9
3,614,580	+		Dshi_3433	0.70	-0.5
3,614,590	+		Dshi_3433	0.70	-1.7
3,614,594	-		Dshi_3433	0.71	-2.9
3,614,599	-		Dshi_3433	0.71	-0.2
3,614,649	+		Dshi_3433	0.75	+0.3
3,614,657	-		Dshi_3433	0.76	-0.8
3,614,676	-		Dshi_3433	0.77	-0.3
3,614,676	-		Dshi_3433	0.77	+0.1
3,614,681	-		Dshi_3433	0.77	-0.8
3,614,721	+		Dshi_3433	0.81	-0.0
3,614,761	+		Dshi_3433	0.84	-0.0
3,614,799	+		Dshi_3433	0.87	+0.6
3,614,804	+		Dshi_3433	0.87	+1.1
3,614,804	+		Dshi_3433	0.87	-0.4
3,614,804	+		Dshi_3433	0.87	+0.7
3,614,804	+		Dshi_3433	0.87	+0.1
3,614,804	+		Dshi_3433	0.87	-1.5
3,614,804	+		Dshi_3433	0.87	-0.5
3,614,804	+		Dshi_3433	0.87	+1.0
3,614,804	+		Dshi_3433	0.87	-0.3
3,614,804	+		Dshi_3433	0.87	+0.6
3,614,804	+		Dshi_3433	0.87	-0.2
3,614,804	+		Dshi_3433	0.87	-1.8
3,614,804	+		Dshi_3433	0.87	+0.1
3,614,804	+		Dshi_3433	0.87	-2.5
3,614,812	-		Dshi_3433	0.88	-0.2
3,614,812	-		Dshi_3433	0.88	-0.3
3,614,812	-		Dshi_3433	0.88	-1.0
3,614,812	-		Dshi_3433	0.88	+1.5
3,614,812	-		Dshi_3433	0.88	+2.1
3,614,812	-		Dshi_3433	0.88	+0.8
3,614,812	-		Dshi_3433	0.88	+0.1
3,614,812	-		Dshi_3433	0.88	+0.0
3,614,828	+		Dshi_3433	0.89	-1.4
3,614,828	+		Dshi_3433	0.89	+0.2
3,614,828	+		Dshi_3433	0.89	+1.1
3,614,861	-				-0.3
3,614,866	+				-1.0
3,614,866	-				-0.0
3,614,871	+				+0.3
3,614,879	-				+0.7
3,614,886	+				-0.6
3,614,890	+				-0.6
3,614,890	+				-0.3
3,614,898	-				+0.0
3,614,900	-				-0.3
3,614,901	+				-0.9
3,614,908	+				+0.1
3,614,908	+				-0.3
3,614,908	+				-2.4
3,614,908	+				-1.1
3,614,925	-				+0.2
3,614,925	-				+0.1
3,614,926	-				+1.2
3,614,935	+				-0.1
3,614,943	-				+2.2
3,614,954	-				-0.4
3,614,983	-				-0.0
3,614,983	-				-1.9
3,614,985	-				+1.0
3,614,990	+				-0.5
3,614,990	+				-1.2
3,614,998	-				+0.3
3,615,029	-				+0.8
3,615,029	-				-0.5
3,615,520	-				-0.9
3,615,520	-				-0.3
3,615,525	-				-0.7
3,615,572	-				-1.3
3,615,622	+				-1.3
3,615,665	-		Dshi_3435	0.14	+0.1
3,615,677	+		Dshi_3435	0.15	-1.0
3,615,722	+		Dshi_3435	0.19	-1.6
3,615,722	-		Dshi_3435	0.19	-0.7
3,615,835	+		Dshi_3435	0.31	-1.1
3,615,843	-		Dshi_3435	0.32	-2.6
3,615,843	-		Dshi_3435	0.32	-1.1
3,615,864	-		Dshi_3435	0.34	-2.7
3,615,878	+		Dshi_3435	0.35	-0.7
3,615,893	+		Dshi_3435	0.37	+0.5
3,615,896	-		Dshi_3435	0.37	-0.8
3,615,907	-		Dshi_3435	0.38	-0.1
3,615,937	-		Dshi_3435	0.41	-3.2