Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3422

Experiment: m.b. Cholin acetate 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cholin acetate 40 mM
3,602,111	+		Dshi_3421	0.40	-0.9
3,602,111	+		Dshi_3421	0.40	-1.0
3,602,124	-		Dshi_3421	0.41	-0.8
3,602,130	+		Dshi_3421	0.41	-3.4
3,602,155	+		Dshi_3421	0.43	-1.7
3,602,193	+		Dshi_3421	0.46	-0.7
3,602,193	+		Dshi_3421	0.46	-1.3
3,602,193	+		Dshi_3421	0.46	-0.0
3,602,193	+		Dshi_3421	0.46	+0.1
3,602,193	+		Dshi_3421	0.46	-1.0
3,602,193	+		Dshi_3421	0.46	+0.1
3,602,201	-		Dshi_3421	0.46	-1.0
3,602,223	+		Dshi_3421	0.48	+2.4
3,602,231	-		Dshi_3421	0.48	+0.2
3,602,268	+		Dshi_3421	0.51	-2.0
3,602,268	+		Dshi_3421	0.51	-0.6
3,602,268	+		Dshi_3421	0.51	+0.1
3,602,268	+		Dshi_3421	0.51	+0.3
3,602,268	+		Dshi_3421	0.51	-0.7
3,602,276	-		Dshi_3421	0.51	+0.4
3,602,276	-		Dshi_3421	0.51	+0.4
3,602,294	-		Dshi_3421	0.52	+0.6
3,602,296	+		Dshi_3421	0.53	-3.0
3,602,296	+		Dshi_3421	0.53	-0.1
3,602,296	+		Dshi_3421	0.53	-1.9
3,602,304	-		Dshi_3421	0.53	-0.2
3,602,316	+		Dshi_3421	0.54	-0.4
3,602,336	+		Dshi_3421	0.55	-0.1
3,602,361	-		Dshi_3421	0.57	-0.1
3,602,391	-		Dshi_3421	0.59	-1.6
3,602,413	+		Dshi_3421	0.60	-0.8
3,602,458	+		Dshi_3421	0.63	+0.6
3,602,458	+		Dshi_3421	0.63	+0.7
3,602,471	-		Dshi_3421	0.64	-0.8
3,602,583	-		Dshi_3421	0.72	-1.1
3,602,662	-		Dshi_3421	0.77	-0.3
3,602,742	-		Dshi_3421	0.82	+0.0
3,602,742	-		Dshi_3421	0.82	+0.6
3,602,756	-		Dshi_3421	0.83	-0.7
3,602,861	-				+0.2
3,602,866	-				-0.3
3,602,903	+				+0.5
3,602,951	+				-2.2
3,602,997	+				-3.0
3,603,028	+				-1.0
3,603,109	+		Dshi_3422	0.18	+1.3
3,603,129	-		Dshi_3422	0.22	-0.3
3,603,250	+		Dshi_3422	0.42	+1.5
3,603,263	-		Dshi_3422	0.44	-1.3
3,603,311	+		Dshi_3422	0.52	-1.5
3,603,321	-		Dshi_3422	0.54	+2.1
3,603,321	-		Dshi_3422	0.54	+0.5
3,603,409	+		Dshi_3422	0.69	+0.4
3,603,411	+		Dshi_3422	0.69	+0.7
3,603,412	-		Dshi_3422	0.69	-1.4
3,603,422	-		Dshi_3422	0.71	+1.2
3,603,446	+		Dshi_3422	0.75	-0.4
3,603,469	+		Dshi_3422	0.79	-0.0
3,603,490	-		Dshi_3422	0.82	+1.1
3,603,512	+		Dshi_3422	0.86	-1.1
3,603,538	-				-1.1
3,603,574	-				-0.7
3,603,589	+				+0.8
3,603,633	-				-0.2
3,603,662	-		Dshi_3423	0.11	+1.0
3,603,692	+		Dshi_3423	0.17	-0.0
3,603,692	+		Dshi_3423	0.17	-0.9
3,603,692	+		Dshi_3423	0.17	+0.7
3,603,692	+		Dshi_3423	0.17	-0.1
3,603,700	-		Dshi_3423	0.18	-1.3
3,603,700	-		Dshi_3423	0.18	+0.6
3,603,700	-		Dshi_3423	0.18	+1.1
3,603,758	-		Dshi_3423	0.28	-0.9
3,603,760	+		Dshi_3423	0.28	-0.5
3,603,760	+		Dshi_3423	0.28	-1.6
3,603,760	+		Dshi_3423	0.28	+0.5
3,603,768	-		Dshi_3423	0.30	-1.3
3,603,793	+		Dshi_3423	0.34	+0.8
3,603,796	+		Dshi_3423	0.35	+0.6
3,603,801	-		Dshi_3423	0.36	-0.4
3,603,803	+		Dshi_3423	0.36	-1.2
3,603,803	+		Dshi_3423	0.36	+0.0
3,603,811	-		Dshi_3423	0.37	-0.2
3,603,811	-		Dshi_3423	0.37	+0.2
3,603,811	-		Dshi_3423	0.37	+0.1
3,603,811	-		Dshi_3423	0.37	+0.7
3,603,811	-		Dshi_3423	0.37	+0.1
3,603,811	-		Dshi_3423	0.37	-1.7
3,603,811	-		Dshi_3423	0.37	+0.8
3,603,811	-		Dshi_3423	0.37	+0.0
3,603,811	-		Dshi_3423	0.37	-0.1
3,603,816	+		Dshi_3423	0.38	+0.9
3,603,823	-		Dshi_3423	0.39	+0.2
3,603,826	+		Dshi_3423	0.40	-1.8
3,603,826	+		Dshi_3423	0.40	-1.5
3,603,839	-		Dshi_3423	0.42	+0.5
3,603,843	+		Dshi_3423	0.43	+0.3
3,603,843	+		Dshi_3423	0.43	-0.7
3,603,843	+		Dshi_3423	0.43	-2.1
3,603,851	-		Dshi_3423	0.44	-0.1
3,603,851	-		Dshi_3423	0.44	-0.9
3,603,856	+		Dshi_3423	0.45	-1.0
3,603,856	+		Dshi_3423	0.45	+0.6
3,603,856	+		Dshi_3423	0.45	+0.7
3,603,856	+		Dshi_3423	0.45	-0.2
3,603,857	-		Dshi_3423	0.45	-0.3
3,603,864	-		Dshi_3423	0.47	+0.2
3,603,864	-		Dshi_3423	0.47	+0.0
3,603,864	-		Dshi_3423	0.47	+1.5
3,603,874	+		Dshi_3423	0.48	+0.7
3,603,877	-		Dshi_3423	0.49	+0.3
3,603,877	-		Dshi_3423	0.49	+0.5
3,603,883	+		Dshi_3423	0.50	-0.4
3,603,910	+		Dshi_3423	0.55	-0.9
3,603,914	+		Dshi_3423	0.55	-0.0
3,603,918	-		Dshi_3423	0.56	-0.3
3,603,932	-		Dshi_3423	0.58	-0.4
3,603,932	-		Dshi_3423	0.58	+2.1
3,603,940	-		Dshi_3423	0.60	-0.6
3,603,942	-		Dshi_3423	0.60	-1.5
3,603,942	-		Dshi_3423	0.60	-0.8
3,603,946	-		Dshi_3423	0.61	-0.1
3,603,958	+		Dshi_3423	0.63	-0.1
3,603,966	-		Dshi_3423	0.64	-0.1
3,603,967	+		Dshi_3423	0.64	-3.0
3,603,967	+		Dshi_3423	0.64	-3.4
3,603,967	+		Dshi_3423	0.64	-0.2
3,603,975	-		Dshi_3423	0.66	+1.0
3,603,975	-		Dshi_3423	0.66	-1.3
3,603,975	-		Dshi_3423	0.66	+1.2
3,603,975	-		Dshi_3423	0.66	+0.0
3,603,975	-		Dshi_3423	0.66	+1.2
3,603,975	-		Dshi_3423	0.66	-1.0
3,603,975	-		Dshi_3423	0.66	-0.5
3,603,975	-		Dshi_3423	0.66	+0.2
3,603,975	-		Dshi_3423	0.66	+0.6
3,603,975	-		Dshi_3423	0.66	+0.5
3,603,975	-		Dshi_3423	0.66	+1.1
3,603,977	+		Dshi_3423	0.66	+1.5
3,603,977	+		Dshi_3423	0.66	-0.4
3,603,977	+		Dshi_3423	0.66	+0.1
3,603,977	+		Dshi_3423	0.66	+1.2
3,603,980	-		Dshi_3423	0.67	+0.1
3,603,980	-		Dshi_3423	0.67	+0.6
3,603,985	+		Dshi_3423	0.68	-0.7
3,603,985	-		Dshi_3423	0.68	+0.7
3,603,985	-		Dshi_3423	0.68	-0.2
3,603,998	+		Dshi_3423	0.70	-0.9
3,604,019	+		Dshi_3423	0.73	-2.0
3,604,019	+		Dshi_3423	0.73	+0.5
3,604,027	-		Dshi_3423	0.75	-0.4
3,604,074	+		Dshi_3423	0.83	-0.3
3,604,079	+		Dshi_3423	0.84	-0.3
3,604,079	+		Dshi_3423	0.84	+2.1
3,604,082	-		Dshi_3423	0.84	-0.3
3,604,082	-		Dshi_3423	0.84	+0.0
3,604,085	-		Dshi_3423	0.85	+0.3
3,604,087	-		Dshi_3423	0.85	-2.0
3,604,087	-		Dshi_3423	0.85	-0.3
3,604,087	-		Dshi_3423	0.85	+1.2
3,604,087	-		Dshi_3423	0.85	+1.0
3,604,087	-		Dshi_3423	0.85	-0.1
3,604,087	-		Dshi_3423	0.85	-2.3
3,604,103	+		Dshi_3423	0.88	-0.1
3,604,103	+		Dshi_3423	0.88	-0.5
3,604,164	+				-0.6
3,604,169	+				-0.5
3,604,169	+				-0.4
3,604,169	+				-0.4
3,604,177	-				-0.2
3,604,177	-				-0.8
3,604,177	-				-2.2
3,604,179	+				-1.0
3,604,187	-				+0.0
3,604,187	-				+0.5
3,604,213	-				-0.4
3,604,213	-				+1.3
3,604,222	+				+0.1
3,604,230	-				-1.8
3,604,255	+				-0.4
3,604,255	+				-0.3
3,604,258	-				-0.2
3,604,261	-				-0.0
3,604,263	-				-0.8
3,604,263	-				+0.3
3,604,264	+				-2.3
3,604,264	+				+0.6
3,604,273	-				+0.7
3,604,273	-				+0.1
3,604,273	-				+0.9
3,604,277	+				+1.2
3,604,277	+				+1.3
3,604,282	-				-3.7
3,604,285	-				-0.6
3,604,285	-				-0.8
3,604,324	+				-0.9
3,604,337	-				-0.0
3,604,337	-				-2.8
3,604,337	-				-1.2
3,604,358	+		Dshi_3424	0.10	+1.0
3,604,365	+		Dshi_3424	0.11	+1.9
3,604,365	+		Dshi_3424	0.11	-1.0
3,604,365	+		Dshi_3424	0.11	+1.3
3,604,365	+		Dshi_3424	0.11	+0.2
3,604,373	-		Dshi_3424	0.11	-0.1
3,604,373	-		Dshi_3424	0.11	+1.1
3,604,381	-		Dshi_3424	0.12	+1.3
3,604,381	-		Dshi_3424	0.12	-2.6
3,604,388	+		Dshi_3424	0.12	-0.6
3,604,401	+		Dshi_3424	0.13	-0.2
3,604,401	+		Dshi_3424	0.13	+0.1
3,604,403	+		Dshi_3424	0.13	-1.2
3,604,403	+		Dshi_3424	0.13	+0.3
3,604,409	-		Dshi_3424	0.13	+0.8
3,604,411	+		Dshi_3424	0.13	-1.1
3,604,411	+		Dshi_3424	0.13	-0.2
3,604,413	-		Dshi_3424	0.13	+0.3
3,604,416	+		Dshi_3424	0.13	-0.4
3,604,416	+		Dshi_3424	0.13	-2.3
3,604,419	-		Dshi_3424	0.14	-0.6
3,604,419	-		Dshi_3424	0.14	-0.4
3,604,432	-		Dshi_3424	0.14	-0.9
3,604,441	-		Dshi_3424	0.15	-0.3
3,604,455	+		Dshi_3424	0.16	+1.3
3,604,462	-		Dshi_3424	0.16	-0.7
3,604,464	-		Dshi_3424	0.16	+0.6
3,604,486	+		Dshi_3424	0.17	+0.3
3,604,492	+		Dshi_3424	0.18	+0.7
3,604,513	+		Dshi_3424	0.19	-1.5
3,604,515	+		Dshi_3424	0.19	+0.9
3,604,515	+		Dshi_3424	0.19	-0.1
3,604,515	+		Dshi_3424	0.19	-0.1
3,604,515	+		Dshi_3424	0.19	-1.2
3,604,515	+		Dshi_3424	0.19	-0.1
3,604,516	-		Dshi_3424	0.19	-1.6
3,604,522	+		Dshi_3424	0.19	-0.7
3,604,523	-		Dshi_3424	0.19	+0.1
3,604,523	-		Dshi_3424	0.19	-1.5
3,604,527	+		Dshi_3424	0.20	+0.2
3,604,527	+		Dshi_3424	0.20	-0.7
3,604,527	+		Dshi_3424	0.20	-1.2
3,604,530	+		Dshi_3424	0.20	-0.5
3,604,535	-		Dshi_3424	0.20	-0.2
3,604,535	-		Dshi_3424	0.20	-3.1
3,604,535	-		Dshi_3424	0.20	-3.2
3,604,535	-		Dshi_3424	0.20	-1.1
3,604,542	-		Dshi_3424	0.20	-0.1
3,604,548	-		Dshi_3424	0.21	-0.5
3,604,555	+		Dshi_3424	0.21	+0.0
3,604,563	-		Dshi_3424	0.22	-2.9