Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3407

Experiment: m.b. Cholin acetate 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Cholin acetate 40 mM
3,583,865	+				-0.1
3,583,873	-				-4.6
3,583,918	+				+0.6
3,583,932	+				-0.8
3,583,932	+				+0.7
3,583,937	+				-1.6
3,583,937	+				+0.0
3,583,937	+				-0.8
3,583,945	-				-0.2
3,583,945	-				-0.7
3,583,945	-				+0.1
3,583,945	-				+1.8
3,583,946	-				-0.1
3,583,951	+				-0.7
3,583,955	-				-2.3
3,583,959	+				+0.2
3,583,963	-				-0.1
3,583,963	-				+1.4
3,583,992	+				-1.0
3,583,992	+				+3.4
3,583,992	+				-0.6
3,583,999	-				+0.2
3,584,000	-				+0.3
3,584,000	-				-1.3
3,584,004	-				-0.1
3,584,004	-				+0.2
3,584,007	+				+1.6
3,584,038	+				-2.4
3,584,042	+				-0.0
3,584,072	+				-0.7
3,584,072	+				-0.2
3,584,080	-				+0.9
3,584,094	-				+1.6
3,584,095	+				-1.9
3,584,095	-				+1.5
3,584,095	-				-1.0
3,584,105	+				-0.5
3,584,105	+				+0.3
3,584,105	+				-0.1
3,584,105	+				-0.9
3,584,105	+				-0.0
3,584,113	+				-0.1
3,584,113	+				-0.6
3,584,113	+				+0.5
3,584,113	-				-3.5
3,584,113	-				+1.0
3,584,121	-				-2.2
3,584,121	-				-0.2
3,584,129	+				-2.9
3,584,129	+				-1.2
3,584,129	+				-0.2
3,584,130	+				+0.0
3,584,130	+				-0.2
3,584,137	-				-1.7
3,584,137	-				-0.3
3,584,142	-				-0.6
3,584,167	+				+0.4
3,584,167	+				-1.8
3,584,168	+				-0.2
3,584,169	-				-0.4
3,584,183	+				-0.6
3,584,183	+				-0.6
3,584,183	+				+1.2
3,584,183	+				-3.3
3,584,183	+				-2.8
3,584,188	+				-0.4
3,584,188	+				-0.8
3,584,191	-				+0.8
3,584,191	-				-0.1
3,584,241	-		Dshi_3406	0.18	-0.1
3,584,286	+		Dshi_3406	0.26	-1.4
3,584,289	+		Dshi_3406	0.26	+1.0
3,584,294	+		Dshi_3406	0.27	-2.2
3,584,300	-		Dshi_3406	0.28	-0.3
3,584,321	-		Dshi_3406	0.32	+0.4
3,584,336	+		Dshi_3406	0.35	-0.2
3,584,336	+		Dshi_3406	0.35	-2.4
3,584,336	+		Dshi_3406	0.35	-0.4
3,584,336	+		Dshi_3406	0.35	+0.0
3,584,336	+		Dshi_3406	0.35	-2.2
3,584,341	+		Dshi_3406	0.36	-0.1
3,584,344	-		Dshi_3406	0.36	-0.2
3,584,349	+		Dshi_3406	0.37	-0.1
3,584,349	-		Dshi_3406	0.37	-2.1
3,584,349	-		Dshi_3406	0.37	-3.6
3,584,349	-		Dshi_3406	0.37	-3.0
3,584,362	-		Dshi_3406	0.40	-0.7
3,584,365	+		Dshi_3406	0.40	-3.1
3,584,365	+		Dshi_3406	0.40	+0.3
3,584,367	-		Dshi_3406	0.41	+0.9
3,584,367	-		Dshi_3406	0.41	-0.6
3,584,367	-		Dshi_3406	0.41	+1.1
3,584,369	+		Dshi_3406	0.41	-2.6
3,584,462	+		Dshi_3406	0.58	-0.9
3,584,475	+		Dshi_3406	0.60	-3.1
3,584,478	-		Dshi_3406	0.61	+0.5
3,584,485	+		Dshi_3406	0.62	-0.9
3,584,493	-		Dshi_3406	0.64	-0.5
3,584,493	-		Dshi_3406	0.64	+0.6
3,584,493	-		Dshi_3406	0.64	+0.1
3,584,493	-		Dshi_3406	0.64	-1.5
3,584,543	+		Dshi_3406	0.73	-0.6
3,584,583	-		Dshi_3406	0.80	-0.6
3,584,767	+				-1.1
3,584,775	+				-2.8
3,584,775	-				-0.6
3,584,783	-				+0.6
3,584,783	-				-0.4
3,584,783	-				+0.4
3,584,783	-				-0.5
3,584,799	+				-1.6
3,584,807	-				+0.6
3,584,854	-				-0.2
3,584,883	+				+1.9
3,584,886	-				+0.9
3,584,915	+				+0.9
3,584,919	+				+0.4
3,584,928	+				+0.3
3,584,940	-				+1.1
3,584,967	+				+0.6
3,584,969	+				+0.7
3,584,969	+				+0.5
3,584,969	+				+0.2
3,584,977	-				+0.4
3,584,987	-				-0.2
3,585,034	+				+0.3
3,585,053	-				-0.6
3,585,076	+		Dshi_3407	0.11	+0.6
3,585,076	+		Dshi_3407	0.11	+1.4
3,585,081	-		Dshi_3407	0.11	-1.5
3,585,137	+		Dshi_3407	0.14	+1.6
3,585,145	-		Dshi_3407	0.14	+1.0
3,585,145	-		Dshi_3407	0.14	+0.6
3,585,150	-		Dshi_3407	0.14	+1.7
3,585,158	+		Dshi_3407	0.15	-0.7
3,585,166	-		Dshi_3407	0.15	+0.9
3,585,179	+		Dshi_3407	0.16	+0.4
3,585,190	+		Dshi_3407	0.16	+1.1
3,585,241	-		Dshi_3407	0.19	+1.1
3,585,278	-		Dshi_3407	0.20	+0.9
3,585,295	+		Dshi_3407	0.21	+1.1
3,585,324	-		Dshi_3407	0.23	+0.2
3,585,324	-		Dshi_3407	0.23	-0.3
3,585,348	-		Dshi_3407	0.24	+0.8
3,585,349	-		Dshi_3407	0.24	+0.6
3,585,355	+		Dshi_3407	0.24	+1.0
3,585,363	-		Dshi_3407	0.24	-0.4
3,585,404	+		Dshi_3407	0.26	+0.9
3,585,407	+		Dshi_3407	0.27	+2.0
3,585,412	+		Dshi_3407	0.27	+0.1
3,585,412	-		Dshi_3407	0.27	+0.8
3,585,440	-		Dshi_3407	0.28	+1.5
3,585,515	+		Dshi_3407	0.32	+1.0
3,585,554	-		Dshi_3407	0.33	+0.5
3,585,572	-		Dshi_3407	0.34	+2.8
3,585,576	-		Dshi_3407	0.35	+1.6
3,585,605	+		Dshi_3407	0.36	-0.9
3,585,672	-		Dshi_3407	0.39	+0.2
3,585,748	+		Dshi_3407	0.43	+0.2
3,585,751	-		Dshi_3407	0.43	+0.2
3,585,751	-		Dshi_3407	0.43	+1.9
3,585,756	-		Dshi_3407	0.43	+0.7
3,585,789	-		Dshi_3407	0.45	+0.1
3,585,834	+		Dshi_3407	0.47	+1.3
3,585,842	-		Dshi_3407	0.47	+0.7
3,585,842	-		Dshi_3407	0.47	+1.3
3,585,857	-		Dshi_3407	0.48	-0.1
3,585,869	+		Dshi_3407	0.48	+0.5
3,585,873	-		Dshi_3407	0.49	+1.0
3,585,907	+		Dshi_3407	0.50	-0.1
3,585,918	-		Dshi_3407	0.51	+1.1
3,586,168	-		Dshi_3407	0.63	+0.2
3,586,175	+		Dshi_3407	0.63	+1.0
3,586,178	+		Dshi_3407	0.63	+0.8
3,586,215	-		Dshi_3407	0.65	+0.4
3,586,254	+		Dshi_3407	0.67	+0.4
3,586,255	+		Dshi_3407	0.67	-1.1
3,586,268	-		Dshi_3407	0.67	+0.8
3,586,317	+		Dshi_3407	0.70	-1.4
3,586,583	+		Dshi_3407	0.82	-0.9
3,586,606	-		Dshi_3407	0.83	-1.3
3,586,782	-				+1.5
3,586,813	+				+0.1
3,586,869	+				+1.7
3,586,974	-				-0.7
3,587,016	-				-1.5
3,587,067	+				-0.0
3,587,096	-		Dshi_3408	0.11	-0.2
3,587,174	+		Dshi_3408	0.18	-1.0
3,587,182	-		Dshi_3408	0.19	+1.2
3,587,412	-		Dshi_3408	0.38	-0.5
3,587,421	+		Dshi_3408	0.39	+0.6
3,587,429	-		Dshi_3408	0.40	+0.7
3,587,448	+		Dshi_3408	0.41	-0.3
3,587,456	-		Dshi_3408	0.42	+0.1
3,587,474	-		Dshi_3408	0.43	+0.5
3,587,748	+		Dshi_3408	0.67	-0.5
3,587,816	+		Dshi_3408	0.72	-0.2
3,587,824	-		Dshi_3408	0.73	+0.4