Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2846 and Dshi_2847 are separated by 57 nucleotides Dshi_2847 and Dshi_2848 overlap by 4 nucleotides Dshi_2848 and Dshi_2849 are separated by 130 nucleotides Dshi_2849 and Dshi_2850 overlap by 4 nucleotides
Dshi_2846: Dshi_2846 - inner-membrane translocator (RefSeq), at 3,003,577 to 3,004,542
_2846
Dshi_2847: Dshi_2847 - protein of unknown function DUF81 (RefSeq), at 3,004,600 to 3,005,520
_2847
Dshi_2848: Dshi_2848 - hypothetical protein (RefSeq), at 3,005,517 to 3,006,275
_2848
Dshi_2849: Dshi_2849 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,006,406 to 3,007,137
_2849
Dshi_2850: Dshi_2850 - AAA ATPase (RefSeq), at 3,007,134 to 3,008,669
_2850
Position (kb)
3005
3006
3007 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3004.575 kb on - strand at 3004.614 kb on + strand at 3004.622 kb on - strand at 3005.295 kb on - strand, within Dshi_2847 at 3005.382 kb on + strand, within Dshi_2847 at 3005.802 kb on + strand, within Dshi_2848 at 3006.045 kb on - strand, within Dshi_2848 at 3006.062 kb on - strand, within Dshi_2848 at 3006.140 kb on + strand, within Dshi_2848 at 3006.172 kb on + strand, within Dshi_2848 at 3006.333 kb on + strand at 3006.402 kb on + strand at 3006.472 kb on - strand at 3006.621 kb on + strand, within Dshi_2849 at 3006.675 kb on - strand, within Dshi_2849 at 3006.890 kb on + strand, within Dshi_2849 at 3007.024 kb on - strand, within Dshi_2849 at 3007.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 3,004,575 - -1.4 3,004,614 + +3.9 3,004,622 - +2.5 3,005,295 - Dshi_2847 0.75 +2.0 3,005,382 + Dshi_2847 0.85 +1.6 3,005,802 + Dshi_2848 0.38 +2.8 3,006,045 - Dshi_2848 0.70 +3.7 3,006,062 - Dshi_2848 0.72 +2.7 3,006,140 + Dshi_2848 0.82 +3.2 3,006,172 + Dshi_2848 0.86 +3.8 3,006,333 + -1.5 3,006,402 + -0.6 3,006,472 - +1.2 3,006,621 + Dshi_2849 0.29 -0.9 3,006,675 - Dshi_2849 0.37 +0.0 3,006,890 + Dshi_2849 0.66 -0.1 3,007,024 - Dshi_2849 0.84 +0.5 3,007,218 + +3.0
Or see this region's nucleotide sequence