Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1723

Experiment: m.b. Cholin acetate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1721 and Dshi_1722 are separated by 39 nucleotidesDshi_1722 and Dshi_R0031 are separated by 85 nucleotidesDshi_R0031 and Dshi_1723 are separated by 59 nucleotidesDshi_1723 and Dshi_1724 are separated by 343 nucleotides Dshi_1721: Dshi_1721 - integration host factor, alpha subunit (RefSeq), at 1,788,324 to 1,788,629 _1721 Dshi_1722: Dshi_1722 - transcriptional regulator, MerR family (RefSeq), at 1,788,669 to 1,789,406 _1722 Dshi_R0031: Dshi_R0031 - tRNA-Pro (RefSeq), at 1,789,492 to 1,789,568 _R0031 Dshi_1723: Dshi_1723 - 2-deoxycytidine 5-triphosphate deaminase (RefSeq), at 1,789,628 to 1,790,722 _1723 Dshi_1724: Dshi_1724 - segregation and condensation protein B (RefSeq), at 1,791,066 to 1,791,755 _1724 Position (kb) 1789 1790 1791Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1788.778 kb on - strand, within Dshi_1722at 1789.177 kb on + strand, within Dshi_1722at 1789.704 kb on - strandat 1789.872 kb on - strand, within Dshi_1723at 1790.087 kb on + strand, within Dshi_1723at 1790.417 kb on + strand, within Dshi_1723at 1790.650 kb on + strandat 1790.691 kb on + strandat 1790.834 kb on - strandat 1790.944 kb on + strandat 1791.022 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
remove
1,788,778 - Dshi_1722 0.15 +0.3
1,789,177 + Dshi_1722 0.69 -0.5
1,789,704 - -1.8
1,789,872 - Dshi_1723 0.22 -1.7
1,790,087 + Dshi_1723 0.42 -1.3
1,790,417 + Dshi_1723 0.72 -2.0
1,790,650 + +5.7
1,790,691 + +1.5
1,790,834 - -0.5
1,790,944 + -0.8
1,791,022 + +0.4

Or see this region's nucleotide sequence