Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1491

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1490 and Dshi_1491 are separated by 257 nucleotidesDshi_1491 and Dshi_1492 are separated by 58 nucleotides Dshi_1490: Dshi_1490 - extracellular solute-binding protein family 5 (RefSeq), at 1,548,941 to 1,550,608 _1490 Dshi_1491: Dshi_1491 - transcriptional regulator, AraC family (RefSeq), at 1,550,866 to 1,551,678 _1491 Dshi_1492: Dshi_1492 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 1,551,737 to 1,552,627 _1492 Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -1 0 1 2 3 4at 1550.118 kb on + strand, within Dshi_1490at 1550.209 kb on - strand, within Dshi_1490at 1550.356 kb on + strand, within Dshi_1490at 1550.390 kb on - strand, within Dshi_1490at 1550.427 kb on - strand, within Dshi_1490at 1550.510 kb on - strandat 1550.588 kb on - strandat 1550.617 kb on + strandat 1550.703 kb on - strandat 1550.824 kb on - strandat 1551.082 kb on + strand, within Dshi_1491at 1551.124 kb on - strand, within Dshi_1491at 1551.248 kb on - strand, within Dshi_1491at 1551.262 kb on + strand, within Dshi_1491at 1551.274 kb on + strand, within Dshi_1491at 1551.616 kb on + strandat 1551.625 kb on - strandat 1551.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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1,550,118 + Dshi_1490 0.71 +3.6
1,550,209 - Dshi_1490 0.76 +3.7
1,550,356 + Dshi_1490 0.85 +3.0
1,550,390 - Dshi_1490 0.87 +3.1
1,550,427 - Dshi_1490 0.89 +3.8
1,550,510 - +4.5
1,550,588 - +2.6
1,550,617 + +3.1
1,550,703 - +2.7
1,550,824 - +0.2
1,551,082 + Dshi_1491 0.27 +2.5
1,551,124 - Dshi_1491 0.32 +0.9
1,551,248 - Dshi_1491 0.47 -1.1
1,551,262 + Dshi_1491 0.49 +0.3
1,551,274 + Dshi_1491 0.50 +0.9
1,551,616 + -1.2
1,551,625 - +3.2
1,551,716 - +0.9

Or see this region's nucleotide sequence