Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1345

Experiment: m.b. Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1342 and Dshi_1343 are separated by 193 nucleotidesDshi_1343 and Dshi_1344 are separated by 18 nucleotidesDshi_1344 and Dshi_1345 are separated by 8 nucleotidesDshi_1345 and Dshi_1346 overlap by 4 nucleotidesDshi_1346 and Dshi_1347 are separated by 97 nucleotides Dshi_1342: Dshi_1342 - Helix-turn-helix type 11 domain protein (RefSeq), at 1,395,858 to 1,396,517 _1342 Dshi_1343: Dshi_1343 - sec-independent translocation protein mttA/Hcf106 (RefSeq), at 1,396,711 to 1,396,935 _1343 Dshi_1344: Dshi_1344 - twin-arginine translocation protein, TatB subunit (RefSeq), at 1,396,954 to 1,397,421 _1344 Dshi_1345: Dshi_1345 - Sec-independent protein translocase, TatC subunit (RefSeq), at 1,397,430 to 1,398,470 _1345 Dshi_1346: Dshi_1346 - protein of unknown function DUF815 (RefSeq), at 1,398,467 to 1,399,318 _1346 Dshi_1347: Dshi_1347 - hypothetical protein (RefSeq), at 1,399,416 to 1,400,000 _1347 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -1 0 1at 1396.485 kb on + strandat 1396.510 kb on - strandat 1398.650 kb on + strand, within Dshi_1346at 1398.712 kb on + strand, within Dshi_1346at 1398.712 kb on + strand, within Dshi_1346at 1398.748 kb on + strand, within Dshi_1346at 1398.893 kb on + strand, within Dshi_1346at 1399.028 kb on + strand, within Dshi_1346at 1399.206 kb on + strand, within Dshi_1346at 1399.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM
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1,396,485 + -0.4
1,396,510 - -1.2
1,398,650 + Dshi_1346 0.21 +0.4
1,398,712 + Dshi_1346 0.29 +1.3
1,398,712 + Dshi_1346 0.29 +1.0
1,398,748 + Dshi_1346 0.33 +1.3
1,398,893 + Dshi_1346 0.50 -0.4
1,399,028 + Dshi_1346 0.66 +0.2
1,399,206 + Dshi_1346 0.87 -0.3
1,399,240 - -0.4

Or see this region's nucleotide sequence