Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0959 and Dshi_0960 are separated by 202 nucleotides Dshi_0960 and Dshi_0961 are separated by 115 nucleotides
Dshi_0959: Dshi_0959 - transcriptional regulator, RpiR family (RefSeq), at 983,690 to 984,535
_0959
Dshi_0960: Dshi_0960 - transcriptional regulator, GntR family (RefSeq), at 984,738 to 985,418
_0960
Dshi_0961: Dshi_0961 - Catechol dioxygenase domain protein (RefSeq), at 985,534 to 986,037
_0961
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.813 kb on - strand, within Dshi_0959 at 983.831 kb on + strand, within Dshi_0959 at 983.831 kb on + strand, within Dshi_0959 at 984.038 kb on + strand, within Dshi_0959 at 984.064 kb on + strand, within Dshi_0959 at 984.098 kb on + strand, within Dshi_0959 at 984.189 kb on + strand, within Dshi_0959 at 984.243 kb on + strand, within Dshi_0959 at 984.256 kb on - strand, within Dshi_0959 at 984.288 kb on - strand, within Dshi_0959 at 984.522 kb on - strand at 984.722 kb on + strand at 984.730 kb on - strand at 984.856 kb on - strand, within Dshi_0960 at 984.931 kb on + strand, within Dshi_0960 at 984.939 kb on - strand, within Dshi_0960 at 984.972 kb on - strand, within Dshi_0960 at 985.038 kb on + strand, within Dshi_0960 at 985.065 kb on - strand, within Dshi_0960 at 985.072 kb on - strand, within Dshi_0960 at 985.172 kb on - strand, within Dshi_0960 at 985.292 kb on + strand, within Dshi_0960 at 985.334 kb on - strand, within Dshi_0960 at 985.389 kb on + strand at 985.460 kb on - strand at 985.497 kb on - strand at 985.502 kb on + strand at 985.522 kb on + strand at 985.619 kb on + strand, within Dshi_0961 at 985.676 kb on + strand, within Dshi_0961 at 985.676 kb on + strand, within Dshi_0961 at 985.678 kb on + strand, within Dshi_0961 at 985.693 kb on - strand, within Dshi_0961 at 985.780 kb on - strand, within Dshi_0961 at 985.790 kb on + strand, within Dshi_0961 at 985.836 kb on + strand, within Dshi_0961 at 985.880 kb on + strand, within Dshi_0961 at 985.939 kb on + strand, within Dshi_0961 at 985.948 kb on + strand, within Dshi_0961 at 985.957 kb on - strand, within Dshi_0961 at 986.074 kb on - strand at 986.271 kb on + strand at 986.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 983,813 - Dshi_0959 0.15 +1.2 983,831 + Dshi_0959 0.17 -0.1 983,831 + Dshi_0959 0.17 +2.6 984,038 + Dshi_0959 0.41 +0.6 984,064 + Dshi_0959 0.44 +0.0 984,098 + Dshi_0959 0.48 -0.1 984,189 + Dshi_0959 0.59 -1.2 984,243 + Dshi_0959 0.65 -0.7 984,256 - Dshi_0959 0.67 -3.0 984,288 - Dshi_0959 0.71 +1.0 984,522 - +1.8 984,722 + +0.9 984,730 - -1.1 984,856 - Dshi_0960 0.17 +0.8 984,931 + Dshi_0960 0.28 +0.8 984,939 - Dshi_0960 0.30 +0.7 984,972 - Dshi_0960 0.34 -1.5 985,038 + Dshi_0960 0.44 +0.9 985,065 - Dshi_0960 0.48 +1.5 985,072 - Dshi_0960 0.49 -0.3 985,172 - Dshi_0960 0.64 -1.1 985,292 + Dshi_0960 0.81 +0.2 985,334 - Dshi_0960 0.88 +0.4 985,389 + +1.1 985,460 - -0.2 985,497 - +1.4 985,502 + -0.3 985,522 + -0.7 985,619 + Dshi_0961 0.17 -0.4 985,676 + Dshi_0961 0.28 +1.6 985,676 + Dshi_0961 0.28 -1.1 985,678 + Dshi_0961 0.29 -3.5 985,693 - Dshi_0961 0.32 +0.3 985,780 - Dshi_0961 0.49 -0.2 985,790 + Dshi_0961 0.51 +1.1 985,836 + Dshi_0961 0.60 -0.4 985,880 + Dshi_0961 0.69 +0.0 985,939 + Dshi_0961 0.80 -0.5 985,948 + Dshi_0961 0.82 +0.6 985,957 - Dshi_0961 0.84 +1.2 986,074 - +1.1 986,271 + -0.4 986,279 - -0.8
Or see this region's nucleotide sequence