Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0915 and Dshi_0916 are separated by 271 nucleotides Dshi_0916 and Dshi_0917 are separated by 10 nucleotides
Dshi_0915: Dshi_0915 - phosphomethylpyrimidine kinase (RefSeq), at 936,787 to 937,584
_0915
Dshi_0916: Dshi_0916 - efflux transporter, RND family, MFP subunit (RefSeq), at 937,856 to 939,046
_0916
Dshi_0917: Dshi_0917 - acriflavin resistance protein (RefSeq), at 939,057 to 942,221
_0917
Position (kb) 937
938
939
940 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 936.885 kb on - strand, within Dshi_0915 at 936.914 kb on + strand, within Dshi_0915 at 937.069 kb on + strand, within Dshi_0915 at 937.166 kb on + strand, within Dshi_0915 at 937.176 kb on + strand, within Dshi_0915 at 937.209 kb on - strand, within Dshi_0915 at 937.335 kb on + strand, within Dshi_0915 at 937.348 kb on - strand, within Dshi_0915 at 937.477 kb on + strand, within Dshi_0915 at 937.621 kb on - strand at 937.785 kb on - strand at 937.826 kb on + strand at 937.852 kb on + strand at 937.907 kb on - strand at 937.968 kb on - strand at 938.014 kb on + strand, within Dshi_0916 at 938.231 kb on + strand, within Dshi_0916 at 938.316 kb on - strand, within Dshi_0916 at 938.319 kb on + strand, within Dshi_0916 at 938.670 kb on - strand, within Dshi_0916 at 938.712 kb on - strand, within Dshi_0916 at 938.718 kb on + strand, within Dshi_0916 at 938.783 kb on + strand, within Dshi_0916 at 938.784 kb on - strand, within Dshi_0916 at 938.791 kb on + strand, within Dshi_0916 at 938.854 kb on + strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.876 kb on + strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 939.042 kb on + strand at 939.055 kb on + strand at 939.184 kb on - strand at 939.214 kb on + strand at 939.265 kb on - strand at 939.538 kb on - strand, within Dshi_0917 at 939.563 kb on + strand, within Dshi_0917 at 939.571 kb on - strand, within Dshi_0917 at 939.641 kb on + strand, within Dshi_0917 at 939.660 kb on - strand, within Dshi_0917 at 939.708 kb on + strand, within Dshi_0917 at 939.757 kb on - strand, within Dshi_0917 at 940.024 kb on + strand, within Dshi_0917
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 936,885 - Dshi_0915 0.12 -0.8 936,914 + Dshi_0915 0.16 -1.0 937,069 + Dshi_0915 0.35 -0.3 937,166 + Dshi_0915 0.47 -1.5 937,176 + Dshi_0915 0.49 +0.7 937,209 - Dshi_0915 0.53 +0.2 937,335 + Dshi_0915 0.69 -0.4 937,348 - Dshi_0915 0.70 -1.6 937,477 + Dshi_0915 0.86 -0.8 937,621 - -1.1 937,785 - -0.8 937,826 + -0.6 937,852 + -0.5 937,907 - +1.2 937,968 - -0.1 938,014 + Dshi_0916 0.13 -2.1 938,231 + Dshi_0916 0.31 +0.2 938,316 - Dshi_0916 0.39 +0.2 938,319 + Dshi_0916 0.39 -1.9 938,670 - Dshi_0916 0.68 +5.2 938,712 - Dshi_0916 0.72 +1.8 938,718 + Dshi_0916 0.72 +2.5 938,783 + Dshi_0916 0.78 +2.2 938,784 - Dshi_0916 0.78 -1.4 938,791 + Dshi_0916 0.79 +0.7 938,854 + Dshi_0916 0.84 +0.9 938,862 - Dshi_0916 0.84 +0.2 938,862 - Dshi_0916 0.84 -0.3 938,876 + Dshi_0916 0.86 +0.7 938,894 - Dshi_0916 0.87 +0.0 938,894 - Dshi_0916 0.87 -1.1 939,042 + -0.3 939,055 + -0.0 939,184 - +1.6 939,214 + -0.2 939,265 - +1.2 939,538 - Dshi_0917 0.15 -0.3 939,563 + Dshi_0917 0.16 -1.7 939,571 - Dshi_0917 0.16 -1.3 939,641 + Dshi_0917 0.18 +0.0 939,660 - Dshi_0917 0.19 +3.3 939,708 + Dshi_0917 0.21 -1.6 939,757 - Dshi_0917 0.22 -2.0 940,024 + Dshi_0917 0.31 -1.2
Or see this region's nucleotide sequence