Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0873 and Dshi_0874 are separated by 100 nucleotides Dshi_0874 and Dshi_0875 are separated by 27 nucleotides Dshi_0875 and Dshi_0876 are separated by 23 nucleotides Dshi_0876 and Dshi_0877 are separated by 26 nucleotides
Dshi_0873: Dshi_0873 - hypothetical protein (RefSeq), at 890,141 to 890,812
_0873
Dshi_0874: Dshi_0874 - extracellular solute-binding protein, family 5 (RefSeq), at 890,913 to 891,137
_0874
Dshi_0875: Dshi_0875 - transposase IS3/IS911 family protein (RefSeq), at 891,165 to 891,431
_0875
Dshi_0876: Dshi_0876 - Integrase catalytic region (RefSeq), at 891,455 to 892,276
_0876
Dshi_0877: Dshi_0877 - 4-phytase (RefSeq), at 892,303 to 893,685
_0877
Position (kb) 891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 890.186 kb on - strand at 890.196 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.197 kb on + strand at 890.202 kb on + strand at 890.205 kb on - strand at 890.205 kb on - strand at 890.205 kb on - strand at 890.205 kb on - strand at 890.209 kb on - strand, within Dshi_0873 at 890.218 kb on + strand, within Dshi_0873 at 890.220 kb on + strand, within Dshi_0873 at 890.228 kb on - strand, within Dshi_0873 at 890.234 kb on - strand, within Dshi_0873 at 890.234 kb on - strand, within Dshi_0873 at 890.236 kb on + strand, within Dshi_0873 at 890.236 kb on + strand, within Dshi_0873 at 890.267 kb on - strand, within Dshi_0873 at 890.298 kb on - strand, within Dshi_0873 at 890.308 kb on + strand, within Dshi_0873 at 890.324 kb on - strand, within Dshi_0873 at 890.331 kb on + strand, within Dshi_0873 at 890.331 kb on + strand, within Dshi_0873 at 890.331 kb on + strand, within Dshi_0873 at 890.339 kb on - strand, within Dshi_0873 at 890.339 kb on - strand, within Dshi_0873 at 890.347 kb on + strand, within Dshi_0873 at 890.350 kb on + strand, within Dshi_0873 at 890.355 kb on - strand, within Dshi_0873 at 890.358 kb on + strand, within Dshi_0873 at 890.359 kb on + strand, within Dshi_0873 at 890.359 kb on + strand, within Dshi_0873 at 890.400 kb on - strand, within Dshi_0873 at 890.402 kb on + strand, within Dshi_0873 at 890.404 kb on + strand, within Dshi_0873 at 890.409 kb on + strand, within Dshi_0873 at 890.410 kb on + strand, within Dshi_0873 at 890.410 kb on - strand, within Dshi_0873 at 890.412 kb on - strand, within Dshi_0873 at 890.418 kb on - strand, within Dshi_0873 at 890.418 kb on - strand, within Dshi_0873 at 890.425 kb on + strand, within Dshi_0873 at 890.425 kb on + strand, within Dshi_0873 at 890.426 kb on + strand, within Dshi_0873 at 890.426 kb on + strand, within Dshi_0873 at 890.426 kb on + strand, within Dshi_0873 at 890.433 kb on - strand, within Dshi_0873 at 890.433 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.434 kb on - strand, within Dshi_0873 at 890.444 kb on - strand, within Dshi_0873 at 890.456 kb on + strand, within Dshi_0873 at 890.459 kb on - strand, within Dshi_0873 at 890.468 kb on - strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.471 kb on - strand, within Dshi_0873 at 890.477 kb on + strand, within Dshi_0873 at 890.477 kb on - strand, within Dshi_0873 at 890.477 kb on - strand, within Dshi_0873 at 890.483 kb on + strand, within Dshi_0873 at 890.493 kb on + strand, within Dshi_0873 at 890.501 kb on - strand, within Dshi_0873 at 890.502 kb on + strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.547 kb on + strand, within Dshi_0873 at 890.577 kb on - strand, within Dshi_0873 at 890.580 kb on + strand, within Dshi_0873 at 890.580 kb on + strand, within Dshi_0873 at 890.583 kb on + strand, within Dshi_0873 at 890.583 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on - strand, within Dshi_0873 at 890.593 kb on + strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.597 kb on + strand, within Dshi_0873 at 890.601 kb on - strand, within Dshi_0873 at 890.601 kb on - strand, within Dshi_0873 at 890.602 kb on + strand, within Dshi_0873 at 890.602 kb on + strand, within Dshi_0873 at 890.605 kb on - strand, within Dshi_0873 at 890.605 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.616 kb on + strand, within Dshi_0873 at 890.624 kb on - strand, within Dshi_0873 at 890.628 kb on + strand, within Dshi_0873 at 890.636 kb on - strand, within Dshi_0873 at 890.647 kb on + strand, within Dshi_0873 at 890.647 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.655 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.658 kb on - strand, within Dshi_0873 at 890.659 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.683 kb on - strand, within Dshi_0873 at 890.683 kb on - strand, within Dshi_0873 at 890.713 kb on + strand, within Dshi_0873 at 890.723 kb on + strand, within Dshi_0873 at 890.744 kb on - strand, within Dshi_0873 at 890.744 kb on - strand, within Dshi_0873 at 890.768 kb on + strand at 890.768 kb on - strand at 890.813 kb on - strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.824 kb on - strand at 890.824 kb on - strand at 890.824 kb on - strand at 890.825 kb on - strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.835 kb on - strand at 890.841 kb on + strand at 890.945 kb on - strand, within Dshi_0874 at 890.946 kb on - strand at 890.968 kb on - strand, within Dshi_0874 at 890.995 kb on + strand, within Dshi_0874 at 891.003 kb on - strand, within Dshi_0874 at 891.003 kb on - strand, within Dshi_0874 at 891.008 kb on + strand, within Dshi_0874 at 891.010 kb on + strand, within Dshi_0874 at 891.022 kb on - strand, within Dshi_0874 at 891.025 kb on + strand, within Dshi_0874 at 891.031 kb on + strand, within Dshi_0874 at 891.039 kb on - strand, within Dshi_0874 at 891.039 kb on - strand, within Dshi_0874 at 891.042 kb on + strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.072 kb on + strand, within Dshi_0874 at 891.072 kb on + strand, within Dshi_0874 at 891.073 kb on + strand, within Dshi_0874 at 891.080 kb on - strand, within Dshi_0874 at 891.081 kb on - strand, within Dshi_0874 at 891.092 kb on + strand, within Dshi_0874 at 891.117 kb on - strand at 891.119 kb on - strand at 892.328 kb on + strand at 892.336 kb on - strand at 892.336 kb on - strand at 892.346 kb on + strand at 892.370 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 890,186 - -0.3 890,196 + -1.7 890,197 + +0.3 890,197 + +0.3 890,197 + -0.2 890,197 + -0.6 890,197 + -0.3 890,202 + +0.3 890,205 - +2.5 890,205 - +2.2 890,205 - -0.1 890,205 - +0.6 890,209 - Dshi_0873 0.10 +1.0 890,218 + Dshi_0873 0.11 +0.8 890,220 + Dshi_0873 0.12 -0.6 890,228 - Dshi_0873 0.13 -0.5 890,234 - Dshi_0873 0.14 +0.2 890,234 - Dshi_0873 0.14 -0.1 890,236 + Dshi_0873 0.14 +1.0 890,236 + Dshi_0873 0.14 -1.0 890,267 - Dshi_0873 0.19 +0.0 890,298 - Dshi_0873 0.23 -1.8 890,308 + Dshi_0873 0.25 +0.7 890,324 - Dshi_0873 0.27 -2.5 890,331 + Dshi_0873 0.28 -0.7 890,331 + Dshi_0873 0.28 -1.1 890,331 + Dshi_0873 0.28 +1.5 890,339 - Dshi_0873 0.29 -0.6 890,339 - Dshi_0873 0.29 +1.0 890,347 + Dshi_0873 0.31 -2.1 890,350 + Dshi_0873 0.31 +1.1 890,355 - Dshi_0873 0.32 -0.5 890,358 + Dshi_0873 0.32 +0.2 890,359 + Dshi_0873 0.32 +0.3 890,359 + Dshi_0873 0.32 -0.7 890,400 - Dshi_0873 0.39 -1.2 890,402 + Dshi_0873 0.39 +0.5 890,404 + Dshi_0873 0.39 -1.7 890,409 + Dshi_0873 0.40 +0.3 890,410 + Dshi_0873 0.40 -1.0 890,410 - Dshi_0873 0.40 -0.1 890,412 - Dshi_0873 0.40 -1.5 890,418 - Dshi_0873 0.41 +3.3 890,418 - Dshi_0873 0.41 +3.2 890,425 + Dshi_0873 0.42 -2.2 890,425 + Dshi_0873 0.42 +1.8 890,426 + Dshi_0873 0.42 +0.3 890,426 + Dshi_0873 0.42 -0.8 890,426 + Dshi_0873 0.42 +1.8 890,433 - Dshi_0873 0.43 -0.5 890,433 - Dshi_0873 0.43 +1.2 890,434 - Dshi_0873 0.44 -1.4 890,434 - Dshi_0873 0.44 -2.6 890,434 - Dshi_0873 0.44 +1.0 890,434 - Dshi_0873 0.44 +0.6 890,434 - Dshi_0873 0.44 +1.6 890,434 - Dshi_0873 0.44 -2.0 890,434 - Dshi_0873 0.44 +1.1 890,434 - Dshi_0873 0.44 -0.0 890,434 - Dshi_0873 0.44 -0.0 890,444 - Dshi_0873 0.45 +0.6 890,456 + Dshi_0873 0.47 +2.0 890,459 - Dshi_0873 0.47 -1.2 890,468 - Dshi_0873 0.49 +0.3 890,469 + Dshi_0873 0.49 +1.8 890,469 + Dshi_0873 0.49 +0.5 890,469 + Dshi_0873 0.49 +0.5 890,469 + Dshi_0873 0.49 -1.4 890,469 + Dshi_0873 0.49 +0.6 890,469 + Dshi_0873 0.49 -1.4 890,471 - Dshi_0873 0.49 +1.7 890,477 + Dshi_0873 0.50 -1.6 890,477 - Dshi_0873 0.50 +1.1 890,477 - Dshi_0873 0.50 -0.7 890,483 + Dshi_0873 0.51 -1.0 890,493 + Dshi_0873 0.52 +1.5 890,501 - Dshi_0873 0.54 +1.2 890,502 + Dshi_0873 0.54 -1.3 890,510 - Dshi_0873 0.55 -0.0 890,510 - Dshi_0873 0.55 +2.2 890,510 - Dshi_0873 0.55 +1.3 890,547 + Dshi_0873 0.60 +0.8 890,577 - Dshi_0873 0.65 +0.0 890,580 + Dshi_0873 0.65 -0.6 890,580 + Dshi_0873 0.65 -0.4 890,583 + Dshi_0873 0.66 -1.1 890,583 + Dshi_0873 0.66 -1.6 890,588 + Dshi_0873 0.67 -1.8 890,588 + Dshi_0873 0.67 -0.1 890,588 + Dshi_0873 0.67 +1.7 890,588 + Dshi_0873 0.67 +0.3 890,588 + Dshi_0873 0.67 +1.5 890,588 + Dshi_0873 0.67 -0.6 890,588 + Dshi_0873 0.67 +0.6 890,588 - Dshi_0873 0.67 +1.5 890,593 + Dshi_0873 0.67 +0.4 890,596 - Dshi_0873 0.68 -1.7 890,596 - Dshi_0873 0.68 -0.2 890,596 - Dshi_0873 0.68 -0.2 890,596 - Dshi_0873 0.68 -1.8 890,596 - Dshi_0873 0.68 -0.7 890,596 - Dshi_0873 0.68 +0.6 890,596 - Dshi_0873 0.68 -1.2 890,596 - Dshi_0873 0.68 +0.7 890,596 - Dshi_0873 0.68 +0.0 890,597 + Dshi_0873 0.68 +0.4 890,601 - Dshi_0873 0.68 -0.1 890,601 - Dshi_0873 0.68 +0.9 890,602 + Dshi_0873 0.69 +0.8 890,602 + Dshi_0873 0.69 -1.7 890,605 - Dshi_0873 0.69 +1.4 890,605 - Dshi_0873 0.69 -1.3 890,610 - Dshi_0873 0.70 +0.1 890,610 - Dshi_0873 0.70 +0.3 890,610 - Dshi_0873 0.70 +0.9 890,616 + Dshi_0873 0.71 +0.4 890,624 - Dshi_0873 0.72 +1.3 890,628 + Dshi_0873 0.72 +0.6 890,636 - Dshi_0873 0.74 +0.7 890,647 + Dshi_0873 0.75 +1.2 890,647 + Dshi_0873 0.75 -0.4 890,652 + Dshi_0873 0.76 -2.5 890,652 + Dshi_0873 0.76 -0.1 890,652 + Dshi_0873 0.76 -0.1 890,655 + Dshi_0873 0.76 +2.3 890,657 + Dshi_0873 0.77 +1.2 890,657 + Dshi_0873 0.77 +0.0 890,657 + Dshi_0873 0.77 +0.5 890,657 + Dshi_0873 0.77 +1.2 890,658 - Dshi_0873 0.77 +1.1 890,659 - Dshi_0873 0.77 -2.5 890,665 - Dshi_0873 0.78 +0.0 890,665 - Dshi_0873 0.78 +1.3 890,665 - Dshi_0873 0.78 -0.2 890,683 - Dshi_0873 0.81 +0.1 890,683 - Dshi_0873 0.81 -0.1 890,713 + Dshi_0873 0.85 +0.9 890,723 + Dshi_0873 0.87 -0.5 890,744 - Dshi_0873 0.90 +1.6 890,744 - Dshi_0873 0.90 +0.8 890,768 + -1.7 890,768 - +0.1 890,813 - -1.1 890,816 + -0.1 890,816 + -0.7 890,816 + +0.1 890,816 + -0.0 890,824 - -0.1 890,824 - -1.1 890,824 - -0.3 890,825 - -1.7 890,826 + +0.3 890,826 + -1.1 890,826 + -0.1 890,826 + +0.4 890,834 - +1.6 890,834 - -1.1 890,834 - +0.2 890,834 - -0.2 890,834 - +0.5 890,835 - +1.0 890,841 + -0.2 890,945 - Dshi_0874 0.14 -0.8 890,946 - +1.2 890,968 - Dshi_0874 0.24 +1.3 890,995 + Dshi_0874 0.36 -0.9 891,003 - Dshi_0874 0.40 -0.3 891,003 - Dshi_0874 0.40 +0.4 891,008 + Dshi_0874 0.42 +0.6 891,010 + Dshi_0874 0.43 -0.7 891,022 - Dshi_0874 0.48 +0.4 891,025 + Dshi_0874 0.50 +0.2 891,031 + Dshi_0874 0.52 -0.1 891,039 - Dshi_0874 0.56 +0.7 891,039 - Dshi_0874 0.56 +1.1 891,042 + Dshi_0874 0.57 -3.6 891,050 - Dshi_0874 0.61 +1.0 891,050 - Dshi_0874 0.61 +0.7 891,050 - Dshi_0874 0.61 -0.1 891,050 - Dshi_0874 0.61 +0.5 891,072 + Dshi_0874 0.71 +0.9 891,072 + Dshi_0874 0.71 +0.9 891,073 + Dshi_0874 0.71 -0.4 891,080 - Dshi_0874 0.74 -2.4 891,081 - Dshi_0874 0.75 +1.6 891,092 + Dshi_0874 0.80 -0.6 891,117 - -1.0 891,119 - +0.4 892,328 + +1.4 892,336 - +0.6 892,336 - -1.1 892,346 + +0.2 892,370 + -0.1
Or see this region's nucleotide sequence