Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0810 and Dshi_0811 overlap by 20 nucleotides Dshi_0811 and Dshi_0812 are separated by 183 nucleotides Dshi_0812 and Dshi_0813 are separated by 54 nucleotides Dshi_0813 and Dshi_0814 are separated by 89 nucleotides Dshi_0814 and Dshi_0815 are separated by 204 nucleotides Dshi_0815 and Dshi_0816 are separated by 46 nucleotides
Dshi_0810: Dshi_0810 - hypothetical protein (RefSeq), at 820,707 to 820,949
_0810
Dshi_0811: Dshi_0811 - hypothetical protein (RefSeq), at 820,930 to 821,163
_0811
Dshi_0812: Dshi_0812 - transcriptional regulator, TraR/DksA family (RefSeq), at 821,347 to 821,664
_0812
Dshi_0813: Dshi_0813 - hypothetical protein (RefSeq), at 821,719 to 821,967
_0813
Dshi_0814: Dshi_0814 - hypothetical protein (RefSeq), at 822,057 to 822,242
_0814
Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863
_0815
Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185
_0816
Position (kb) 821
822 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.726 kb on - strand at 820.753 kb on - strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.787 kb on - strand, within Dshi_0810 at 820.827 kb on + strand, within Dshi_0810 at 820.849 kb on + strand, within Dshi_0810 at 821.179 kb on + strand at 821.310 kb on - strand at 821.323 kb on - strand at 821.357 kb on - strand at 821.415 kb on + strand, within Dshi_0812 at 821.461 kb on - strand, within Dshi_0812 at 821.488 kb on - strand, within Dshi_0812 at 821.529 kb on - strand, within Dshi_0812 at 821.613 kb on + strand, within Dshi_0812 at 821.621 kb on - strand, within Dshi_0812 at 821.637 kb on + strand at 821.709 kb on - strand at 821.812 kb on + strand, within Dshi_0813 at 821.844 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.940 kb on + strand, within Dshi_0813 at 821.969 kb on - strand at 821.969 kb on - strand at 821.971 kb on + strand at 822.021 kb on - strand at 822.038 kb on - strand at 822.275 kb on - strand at 822.280 kb on - strand at 822.532 kb on - strand, within Dshi_0815 at 822.683 kb on - strand, within Dshi_0815 at 822.713 kb on - strand, within Dshi_0815 at 822.771 kb on - strand, within Dshi_0815 at 822.796 kb on + strand, within Dshi_0815
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 820,726 - +0.2 820,753 - Dshi_0810 0.19 -0.2 820,779 + Dshi_0810 0.30 -0.5 820,779 + Dshi_0810 0.30 -0.3 820,787 - Dshi_0810 0.33 +0.4 820,827 + Dshi_0810 0.49 -0.2 820,849 + Dshi_0810 0.58 +0.6 821,179 + -1.8 821,310 - +0.7 821,323 - -1.2 821,357 - +0.3 821,415 + Dshi_0812 0.21 +1.0 821,461 - Dshi_0812 0.36 +0.6 821,488 - Dshi_0812 0.44 -0.6 821,529 - Dshi_0812 0.57 +0.1 821,613 + Dshi_0812 0.84 -0.6 821,621 - Dshi_0812 0.86 -0.7 821,637 + -0.1 821,709 - -2.1 821,812 + Dshi_0813 0.37 +2.2 821,844 - Dshi_0813 0.50 +0.3 821,878 - Dshi_0813 0.64 -0.1 821,878 - Dshi_0813 0.64 +2.0 821,940 + Dshi_0813 0.89 +0.6 821,969 - +0.4 821,969 - +2.2 821,971 + +2.5 822,021 - +0.2 822,038 - -0.3 822,275 - -1.2 822,280 - -1.8 822,532 - Dshi_0815 0.20 +0.3 822,683 - Dshi_0815 0.57 -0.8 822,713 - Dshi_0815 0.64 +0.3 822,771 - Dshi_0815 0.78 -0.8 822,796 + Dshi_0815 0.84 -1.3
Or see this region's nucleotide sequence