Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0780 and Dshi_0781 are separated by 4 nucleotides Dshi_0781 and Dshi_0782 are separated by 73 nucleotides Dshi_0782 and Dshi_0783 are separated by 46 nucleotides
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929
_0781
Dshi_0782: Dshi_0782 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 787,003 to 787,569
_0782
Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579
_0783
Position (kb) 787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780 at 786.523 kb on - strand, within Dshi_0780 at 786.600 kb on + strand at 786.621 kb on + strand at 787.008 kb on + strand at 787.018 kb on + strand at 787.026 kb on + strand at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.175 kb on - strand, within Dshi_0782 at 787.256 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.333 kb on + strand, within Dshi_0782 at 787.366 kb on - strand, within Dshi_0782 at 787.385 kb on + strand, within Dshi_0782 at 787.405 kb on - strand, within Dshi_0782 at 787.463 kb on - strand, within Dshi_0782 at 787.563 kb on + strand at 787.576 kb on - strand at 787.604 kb on + strand at 787.606 kb on + strand at 787.664 kb on + strand at 787.672 kb on + strand at 787.733 kb on - strand at 787.801 kb on - strand at 787.801 kb on - strand at 787.850 kb on + strand at 787.903 kb on - strand at 787.934 kb on + strand, within Dshi_0783 at 787.941 kb on - strand, within Dshi_0783 at 787.951 kb on + strand, within Dshi_0783 at 788.031 kb on - strand, within Dshi_0783 at 788.076 kb on - strand, within Dshi_0783 at 788.076 kb on - strand, within Dshi_0783 at 788.078 kb on - strand, within Dshi_0783 at 788.102 kb on + strand, within Dshi_0783 at 788.230 kb on + strand, within Dshi_0783 at 788.280 kb on + strand, within Dshi_0783 at 788.298 kb on + strand, within Dshi_0783 at 788.482 kb on - strand, within Dshi_0783 at 788.529 kb on + strand, within Dshi_0783
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 786,014 - Dshi_0780 0.34 +1.8 786,041 - -0.4 786,084 - Dshi_0780 0.41 +2.2 786,180 + Dshi_0780 0.52 +0.4 786,180 + Dshi_0780 0.52 +0.7 786,192 + Dshi_0780 0.53 +0.5 786,194 + Dshi_0780 0.53 -0.9 786,198 - Dshi_0780 0.53 -1.1 786,274 + Dshi_0780 0.61 -0.1 786,362 + Dshi_0780 0.71 +0.6 786,370 - Dshi_0780 0.72 +2.4 786,406 - Dshi_0780 0.75 +1.4 786,523 - Dshi_0780 0.88 -2.0 786,600 + -1.0 786,621 + -1.7 787,008 + -3.0 787,018 + -1.3 787,026 + -1.0 787,081 + Dshi_0782 0.14 -0.5 787,081 + Dshi_0782 0.14 -0.1 787,081 + Dshi_0782 0.14 -0.9 787,175 - Dshi_0782 0.30 +1.2 787,256 - Dshi_0782 0.45 +0.1 787,319 - Dshi_0782 0.56 -0.1 787,319 - Dshi_0782 0.56 -1.5 787,333 + Dshi_0782 0.58 -0.1 787,366 - Dshi_0782 0.64 +1.1 787,385 + Dshi_0782 0.67 +0.1 787,405 - Dshi_0782 0.71 -0.1 787,463 - Dshi_0782 0.81 +0.2 787,563 + -0.3 787,576 - +0.1 787,604 + +0.2 787,606 + +1.3 787,664 + -1.5 787,672 + +1.6 787,733 - +0.3 787,801 - +0.6 787,801 - -1.4 787,850 + -1.6 787,903 - +0.2 787,934 + Dshi_0783 0.11 -1.1 787,941 - Dshi_0783 0.11 +0.3 787,951 + Dshi_0783 0.11 -1.3 788,031 - Dshi_0783 0.14 -0.6 788,076 - Dshi_0783 0.16 -2.7 788,076 - Dshi_0783 0.16 +0.3 788,078 - Dshi_0783 0.16 +0.7 788,102 + Dshi_0783 0.16 -1.5 788,230 + Dshi_0783 0.21 +1.0 788,280 + Dshi_0783 0.22 -1.8 788,298 + Dshi_0783 0.23 -0.4 788,482 - Dshi_0783 0.29 -0.5 788,529 + Dshi_0783 0.31 +0.1
Or see this region's nucleotide sequence