Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0749 and Dshi_0750 are separated by 658 nucleotides
Dshi_0749: Dshi_0749 - DNA topoisomerase IV, B subunit (RefSeq), at 758,372 to 760,336
_0749
Dshi_0750: Dshi_0750 - hypothetical protein (RefSeq), at 760,995 to 761,789
_0750
Position (kb) 758
759
760
761 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 757.637 kb on - strand at 757.692 kb on - strand at 757.715 kb on - strand at 757.715 kb on - strand at 757.715 kb on - strand at 757.737 kb on - strand at 757.746 kb on + strand at 757.746 kb on + strand at 757.752 kb on + strand at 757.754 kb on - strand at 757.754 kb on - strand at 757.754 kb on - strand at 757.754 kb on - strand at 757.771 kb on - strand at 757.773 kb on + strand at 757.780 kb on - strand at 757.781 kb on - strand at 757.783 kb on + strand at 757.791 kb on - strand at 757.792 kb on + strand at 757.794 kb on + strand at 757.795 kb on - strand at 757.796 kb on + strand at 757.804 kb on - strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.811 kb on + strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.814 kb on - strand at 757.817 kb on + strand at 757.817 kb on + strand at 757.819 kb on - strand at 757.821 kb on + strand at 757.825 kb on - strand at 757.825 kb on - strand at 757.829 kb on - strand at 757.846 kb on - strand at 757.866 kb on + strand at 757.876 kb on + strand at 757.876 kb on + strand at 757.876 kb on + strand at 757.884 kb on + strand at 757.884 kb on - strand at 757.884 kb on - strand at 757.884 kb on - strand at 757.884 kb on - strand at 757.884 kb on - strand at 757.884 kb on - strand at 757.884 kb on - strand at 757.885 kb on - strand at 757.892 kb on - strand at 757.895 kb on - strand at 757.898 kb on - strand at 757.915 kb on + strand at 757.937 kb on + strand at 757.937 kb on + strand at 757.937 kb on + strand at 757.945 kb on - strand at 757.945 kb on - strand at 757.960 kb on - strand at 757.977 kb on - strand at 757.977 kb on - strand at 757.987 kb on + strand at 757.987 kb on - strand at 757.991 kb on + strand at 757.993 kb on + strand at 757.993 kb on + strand at 758.007 kb on + strand at 758.007 kb on + strand at 758.007 kb on + strand at 758.011 kb on - strand at 758.015 kb on - strand at 758.015 kb on - strand at 758.016 kb on + strand at 758.016 kb on + strand at 758.016 kb on + strand at 758.016 kb on + strand at 758.016 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on + strand at 758.017 kb on - strand at 758.017 kb on - strand at 758.024 kb on - strand at 758.024 kb on - strand at 758.024 kb on - strand at 758.024 kb on - strand at 758.024 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.025 kb on - strand at 758.032 kb on + strand at 758.034 kb on - strand at 758.035 kb on - strand at 758.042 kb on + strand at 758.042 kb on + strand at 758.042 kb on + strand at 758.047 kb on - strand at 758.050 kb on + strand at 758.050 kb on - strand at 758.050 kb on - strand at 758.050 kb on - strand at 758.050 kb on - strand at 758.064 kb on - strand at 758.064 kb on - strand at 758.064 kb on - strand at 758.064 kb on - strand at 758.084 kb on + strand at 758.084 kb on + strand at 758.105 kb on - strand at 758.107 kb on + strand at 758.108 kb on - strand at 758.115 kb on - strand at 758.115 kb on - strand at 758.115 kb on - strand at 758.120 kb on - strand at 758.135 kb on - strand at 758.142 kb on + strand at 758.143 kb on + strand at 758.143 kb on + strand at 758.143 kb on - strand at 758.146 kb on - strand at 758.150 kb on - strand at 758.151 kb on - strand at 758.151 kb on - strand at 758.151 kb on - strand at 758.151 kb on - strand at 758.165 kb on - strand at 758.167 kb on + strand at 758.176 kb on + strand at 758.184 kb on - strand at 758.186 kb on - strand at 758.190 kb on + strand at 758.196 kb on - strand at 758.198 kb on + strand at 758.213 kb on - strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.244 kb on + strand at 758.247 kb on + strand at 758.247 kb on + strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.252 kb on - strand at 758.255 kb on - strand at 758.266 kb on - strand at 758.266 kb on - strand at 758.268 kb on + strand at 758.270 kb on + strand at 758.272 kb on + strand at 758.272 kb on + strand at 758.278 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.280 kb on - strand at 758.282 kb on + strand at 758.282 kb on + strand at 758.282 kb on + strand at 758.289 kb on + strand at 758.296 kb on + strand at 758.312 kb on - strand at 758.314 kb on - strand at 758.341 kb on + strand at 758.349 kb on - strand at 758.349 kb on - strand at 758.349 kb on - strand at 758.351 kb on + strand at 758.362 kb on - strand at 760.394 kb on - strand at 760.486 kb on - strand at 760.577 kb on + strand at 760.685 kb on + strand at 760.713 kb on - strand at 760.748 kb on + strand at 760.772 kb on + strand at 760.844 kb on - strand at 760.947 kb on - strand at 760.987 kb on - strand at 761.057 kb on - strand at 761.062 kb on - strand at 761.189 kb on - strand, within Dshi_0750 at 761.205 kb on + strand, within Dshi_0750 at 761.307 kb on - strand, within Dshi_0750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 757,637 - -0.8 757,692 - -0.2 757,715 - +1.0 757,715 - -1.6 757,715 - +0.7 757,737 - -0.1 757,746 + -0.5 757,746 + -0.2 757,752 + -0.9 757,754 - -0.0 757,754 - -1.9 757,754 - -0.5 757,754 - -0.3 757,771 - +0.2 757,773 + -0.4 757,780 - -2.5 757,781 - -0.8 757,783 + -0.8 757,791 - +0.2 757,792 + -0.7 757,794 + +0.4 757,795 - -0.8 757,796 + +0.7 757,804 - +0.9 757,806 + -3.8 757,806 + -1.3 757,806 + +1.5 757,806 + +0.4 757,806 + -0.4 757,806 + -2.4 757,811 + -1.8 757,814 - +1.9 757,814 - -2.4 757,814 - -0.8 757,814 - +0.3 757,814 - -0.3 757,814 - -2.2 757,814 - -0.1 757,814 - +0.1 757,814 - +1.2 757,817 + -1.3 757,817 + +1.6 757,819 - -2.1 757,821 + +0.1 757,825 - +2.2 757,825 - +0.3 757,829 - +0.2 757,846 - +0.7 757,866 + +0.8 757,876 + -0.6 757,876 + -0.5 757,876 + -1.6 757,884 + +0.4 757,884 - -0.3 757,884 - +1.2 757,884 - -0.2 757,884 - -0.3 757,884 - -2.4 757,884 - +0.6 757,884 - +2.2 757,885 - +2.2 757,892 - -0.6 757,895 - -1.2 757,898 - +2.2 757,915 + -0.5 757,937 + +0.3 757,937 + +1.4 757,937 + +0.2 757,945 - +1.0 757,945 - -0.8 757,960 - -1.5 757,977 - -1.4 757,977 - +2.4 757,987 + +0.8 757,987 - -1.6 757,991 + +0.5 757,993 + +1.4 757,993 + -0.4 758,007 + +1.0 758,007 + -0.3 758,007 + -0.2 758,011 - -0.8 758,015 - +1.1 758,015 - +0.4 758,016 + -0.6 758,016 + +2.2 758,016 + -1.7 758,016 + -1.5 758,016 + -0.4 758,017 + +0.6 758,017 + +0.3 758,017 + -0.4 758,017 + +0.2 758,017 + +0.9 758,017 + +0.1 758,017 + +1.1 758,017 + +1.4 758,017 + +0.3 758,017 + +0.6 758,017 + +0.6 758,017 + -0.4 758,017 + -1.8 758,017 + +1.9 758,017 + -0.2 758,017 + -0.5 758,017 + +1.4 758,017 + -0.0 758,017 + +0.6 758,017 + +0.0 758,017 + -1.2 758,017 + +0.8 758,017 + +1.3 758,017 + -0.1 758,017 + -1.8 758,017 + -0.8 758,017 + -2.7 758,017 + -0.8 758,017 + +1.3 758,017 + -0.2 758,017 + -0.7 758,017 + +0.7 758,017 + -2.0 758,017 + -0.0 758,017 + +0.9 758,017 + -0.9 758,017 + -2.5 758,017 + -0.1 758,017 + -0.2 758,017 + +1.4 758,017 + +1.6 758,017 + -0.5 758,017 + +0.2 758,017 + +1.0 758,017 + +0.2 758,017 + -0.5 758,017 + +0.5 758,017 + +0.6 758,017 + +1.6 758,017 + -0.5 758,017 + +0.2 758,017 - -1.3 758,017 - -2.4 758,024 - -0.1 758,024 - -1.4 758,024 - -0.4 758,024 - -0.5 758,024 - +0.5 758,025 - -0.0 758,025 - +0.2 758,025 - +1.2 758,025 - -1.2 758,025 - -0.4 758,025 - -1.5 758,025 - +1.2 758,025 - +2.2 758,025 - +0.8 758,025 - +0.9 758,025 - +3.8 758,025 - +1.2 758,025 - +0.6 758,025 - +0.9 758,025 - -0.6 758,025 - -0.2 758,025 - -2.6 758,025 - +3.8 758,025 - -1.3 758,025 - -1.7 758,025 - -1.4 758,025 - -0.3 758,025 - +0.6 758,025 - +1.2 758,025 - -0.5 758,025 - +0.5 758,025 - +0.6 758,025 - +0.3 758,025 - -1.5 758,025 - +0.9 758,025 - -0.3 758,025 - +1.6 758,025 - +0.2 758,025 - -0.0 758,025 - +0.8 758,032 + -0.8 758,034 - -1.6 758,035 - -0.7 758,042 + -0.1 758,042 + +0.6 758,042 + -0.6 758,047 - +0.5 758,050 + +0.6 758,050 - +1.4 758,050 - -1.5 758,050 - -0.4 758,050 - +0.2 758,064 - -1.0 758,064 - -0.2 758,064 - +1.1 758,064 - -3.7 758,084 + -2.9 758,084 + +0.7 758,105 - -0.5 758,107 + +0.8 758,108 - +1.4 758,115 - +0.3 758,115 - +1.2 758,115 - +0.7 758,120 - +1.0 758,135 - +1.1 758,142 + -0.2 758,143 + -2.8 758,143 + +0.8 758,143 - -2.5 758,146 - +1.2 758,150 - +0.1 758,151 - -2.2 758,151 - -2.2 758,151 - -0.2 758,151 - -2.6 758,165 - -0.8 758,167 + +0.0 758,176 + -0.5 758,184 - +0.2 758,186 - +1.6 758,190 + -1.1 758,196 - +0.9 758,198 + +0.2 758,213 - -1.2 758,244 + +0.4 758,244 + -0.1 758,244 + -0.1 758,244 + +1.2 758,244 + -0.2 758,244 + +1.2 758,244 + -0.8 758,244 + -0.6 758,244 + +2.2 758,244 + -1.6 758,244 + -0.6 758,244 + -2.0 758,244 + -0.4 758,244 + +2.2 758,244 + -1.3 758,247 + -0.0 758,247 + +0.6 758,252 - -1.4 758,252 - +0.1 758,252 - +0.3 758,252 - -1.4 758,252 - +0.3 758,252 - -0.4 758,252 - +2.2 758,252 - +0.0 758,255 - -1.9 758,266 - +0.8 758,266 - +1.7 758,268 + +1.4 758,270 + -2.4 758,272 + +0.2 758,272 + -1.3 758,278 - -2.4 758,280 - +0.2 758,280 - -2.9 758,280 - -1.5 758,280 - -1.7 758,280 - -0.3 758,280 - +0.2 758,280 - +1.8 758,280 - +1.6 758,280 - +0.1 758,280 - +3.3 758,280 - +0.8 758,282 + -0.8 758,282 + -0.6 758,282 + +0.7 758,289 + -0.6 758,296 + -1.1 758,312 - +1.2 758,314 - -2.6 758,341 + +0.0 758,349 - -1.8 758,349 - -1.2 758,349 - +0.3 758,351 + -1.4 758,362 - +0.9 760,394 - +3.2 760,486 - +2.5 760,577 + +0.2 760,685 + -1.5 760,713 - +1.0 760,748 + -2.5 760,772 + -0.3 760,844 - +2.2 760,947 - +2.0 760,987 - +0.8 761,057 - -2.0 761,062 - +0.5 761,189 - Dshi_0750 0.24 +0.6 761,205 + Dshi_0750 0.26 -0.5 761,307 - Dshi_0750 0.39 -0.2
Or see this region's nucleotide sequence