Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0624 and Dshi_6013 are separated by 550 nucleotides Dshi_6013 and Dshi_R0014 are separated by 276 nucleotides Dshi_R0014 and Dshi_R0015 are separated by 175 nucleotides
Dshi_0624: Dshi_0624 - Ferric reductase domain protein transmembrane component domain (RefSeq), at 616,088 to 616,696
_0624
Dshi_6013: Dshi_6013 - 16SrRNA (RefSeq), at 617,247 to 618,708
_6013
Dshi_R0014: Dshi_R0014 - tRNA-Ile (RefSeq), at 618,985 to 619,061
_R0014
Dshi_R0015: Dshi_R0015 - tRNA-Ala (RefSeq), at 619,237 to 619,312
_R0015
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 616.267 kb on + strand, within Dshi_0624 at 616.379 kb on - strand, within Dshi_0624 at 616.398 kb on + strand, within Dshi_0624 at 616.401 kb on + strand, within Dshi_0624 at 616.411 kb on + strand, within Dshi_0624 at 616.425 kb on - strand, within Dshi_0624 at 616.458 kb on + strand, within Dshi_0624 at 616.458 kb on + strand, within Dshi_0624 at 616.466 kb on - strand, within Dshi_0624 at 616.466 kb on - strand, within Dshi_0624 at 616.466 kb on - strand, within Dshi_0624 at 616.466 kb on - strand, within Dshi_0624 at 616.466 kb on - strand, within Dshi_0624 at 616.466 kb on - strand, within Dshi_0624 at 616.475 kb on + strand, within Dshi_0624 at 616.480 kb on + strand, within Dshi_0624 at 616.483 kb on - strand, within Dshi_0624 at 616.488 kb on - strand, within Dshi_0624 at 616.512 kb on + strand, within Dshi_0624 at 616.548 kb on - strand, within Dshi_0624 at 616.621 kb on + strand, within Dshi_0624 at 616.621 kb on + strand, within Dshi_0624 at 616.660 kb on + strand at 616.683 kb on - strand at 616.692 kb on + strand at 616.692 kb on + strand at 616.799 kb on + strand at 616.807 kb on - strand at 616.807 kb on - strand at 616.822 kb on + strand at 616.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 616,267 + Dshi_0624 0.29 +0.1 616,379 - Dshi_0624 0.48 +0.6 616,398 + Dshi_0624 0.51 +1.1 616,401 + Dshi_0624 0.51 +0.1 616,411 + Dshi_0624 0.53 +0.1 616,425 - Dshi_0624 0.55 -0.4 616,458 + Dshi_0624 0.61 +0.6 616,458 + Dshi_0624 0.61 +2.5 616,466 - Dshi_0624 0.62 +0.0 616,466 - Dshi_0624 0.62 +1.0 616,466 - Dshi_0624 0.62 -1.0 616,466 - Dshi_0624 0.62 +0.5 616,466 - Dshi_0624 0.62 +0.1 616,466 - Dshi_0624 0.62 +0.7 616,475 + Dshi_0624 0.64 -2.0 616,480 + Dshi_0624 0.64 +0.3 616,483 - Dshi_0624 0.65 +1.6 616,488 - Dshi_0624 0.66 +0.8 616,512 + Dshi_0624 0.70 +0.4 616,548 - Dshi_0624 0.76 +0.3 616,621 + Dshi_0624 0.88 -1.0 616,621 + Dshi_0624 0.88 -0.1 616,660 + +1.2 616,683 - +0.4 616,692 + -0.5 616,692 + +0.5 616,799 + +0.6 616,807 - +2.6 616,807 - +0.8 616,822 + +1.0 616,831 - +2.1
Or see this region's nucleotide sequence