Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0600 and Dshi_0601 are separated by 253 nucleotides Dshi_0601 and Dshi_0602 are separated by 183 nucleotides
Dshi_0600: Dshi_0600 - MORN repeat-containing protein (RefSeq), at 592,010 to 593,416
_0600
Dshi_0601: Dshi_0601 - NAD+ synthetase (RefSeq), at 593,670 to 595,343
_0601
Dshi_0602: Dshi_0602 - protein of unknown function DUF1025 (RefSeq), at 595,527 to 595,928
_0602
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 592.886 kb on + strand, within Dshi_0600 at 592.899 kb on + strand, within Dshi_0600 at 592.901 kb on + strand, within Dshi_0600 at 593.047 kb on - strand, within Dshi_0600 at 593.225 kb on - strand, within Dshi_0600 at 593.241 kb on - strand, within Dshi_0600 at 593.259 kb on + strand, within Dshi_0600 at 593.259 kb on + strand, within Dshi_0600 at 593.269 kb on + strand, within Dshi_0600 at 593.269 kb on + strand, within Dshi_0600 at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.277 kb on - strand at 593.286 kb on - strand at 593.366 kb on - strand at 593.387 kb on + strand at 593.409 kb on - strand at 593.435 kb on - strand at 593.498 kb on + strand at 593.520 kb on + strand at 593.528 kb on - strand at 593.565 kb on + strand at 593.573 kb on - strand at 595.289 kb on + strand at 595.504 kb on + strand at 595.519 kb on + strand at 595.529 kb on + strand at 595.625 kb on + strand, within Dshi_0602 at 595.625 kb on + strand, within Dshi_0602 at 595.630 kb on + strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.633 kb on - strand, within Dshi_0602 at 595.692 kb on - strand, within Dshi_0602 at 595.697 kb on - strand, within Dshi_0602 at 595.739 kb on + strand, within Dshi_0602 at 595.743 kb on - strand, within Dshi_0602 at 595.747 kb on - strand, within Dshi_0602 at 595.752 kb on - strand, within Dshi_0602 at 595.794 kb on - strand, within Dshi_0602 at 595.797 kb on - strand, within Dshi_0602 at 595.801 kb on + strand, within Dshi_0602 at 595.843 kb on + strand, within Dshi_0602 at 595.884 kb on + strand, within Dshi_0602 at 595.895 kb on + strand at 595.914 kb on - strand at 595.958 kb on + strand at 595.978 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.009 kb on + strand at 596.014 kb on + strand at 596.032 kb on - strand at 596.065 kb on + strand at 596.073 kb on + strand at 596.073 kb on - strand at 596.081 kb on - strand at 596.081 kb on - strand at 596.090 kb on + strand at 596.098 kb on - strand at 596.119 kb on - strand at 596.122 kb on - strand at 596.123 kb on + strand at 596.123 kb on + strand at 596.123 kb on + strand at 596.123 kb on + strand at 596.124 kb on - strand at 596.131 kb on - strand at 596.131 kb on - strand at 596.131 kb on - strand at 596.131 kb on - strand at 596.141 kb on - strand at 596.172 kb on - strand at 596.175 kb on - strand at 596.182 kb on - strand at 596.188 kb on + strand at 596.191 kb on - strand at 596.191 kb on - strand at 596.191 kb on - strand at 596.191 kb on - strand at 596.198 kb on + strand at 596.198 kb on + strand at 596.198 kb on + strand at 596.198 kb on + strand at 596.206 kb on - strand at 596.206 kb on - strand at 596.206 kb on - strand at 596.206 kb on - strand at 596.208 kb on - strand at 596.208 kb on - strand at 596.212 kb on + strand at 596.212 kb on + strand at 596.212 kb on + strand at 596.212 kb on + strand at 596.215 kb on - strand at 596.215 kb on - strand at 596.220 kb on + strand at 596.220 kb on - strand at 596.220 kb on - strand at 596.220 kb on - strand at 596.220 kb on - strand at 596.235 kb on - strand at 596.257 kb on + strand at 596.268 kb on + strand at 596.270 kb on + strand at 596.270 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.275 kb on + strand at 596.278 kb on - strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on + strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.283 kb on - strand at 596.288 kb on - strand at 596.288 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.291 kb on - strand at 596.292 kb on - strand at 596.292 kb on - strand at 596.292 kb on - strand at 596.293 kb on + strand at 596.294 kb on + strand at 596.302 kb on + strand at 596.302 kb on - strand at 596.302 kb on - strand at 596.307 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.309 kb on + strand at 596.310 kb on - strand at 596.316 kb on - strand at 596.316 kb on - strand at 596.316 kb on - strand at 596.316 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.317 kb on - strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.319 kb on + strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.327 kb on - strand at 596.329 kb on + strand at 596.337 kb on - strand at 596.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 592,886 + Dshi_0600 0.62 +0.4 592,899 + Dshi_0600 0.63 -0.2 592,901 + Dshi_0600 0.63 +1.0 593,047 - Dshi_0600 0.74 +1.1 593,225 - Dshi_0600 0.86 +0.2 593,241 - Dshi_0600 0.87 +0.4 593,259 + Dshi_0600 0.89 +2.2 593,259 + Dshi_0600 0.89 -0.3 593,269 + Dshi_0600 0.89 -0.3 593,269 + Dshi_0600 0.89 +0.0 593,277 - -2.1 593,277 - +0.2 593,277 - +0.3 593,277 - -0.4 593,277 - +0.5 593,286 - +0.7 593,366 - -0.4 593,387 + +1.1 593,409 - +1.4 593,435 - +0.2 593,498 + -0.1 593,520 + +0.7 593,528 - +1.1 593,565 + +2.7 593,573 - -1.1 595,289 + +0.0 595,504 + -2.5 595,519 + -1.1 595,529 + -1.1 595,625 + Dshi_0602 0.24 -0.8 595,625 + Dshi_0602 0.24 -0.0 595,630 + Dshi_0602 0.26 +1.0 595,633 - Dshi_0602 0.26 -2.9 595,633 - Dshi_0602 0.26 -2.3 595,633 - Dshi_0602 0.26 +1.1 595,633 - Dshi_0602 0.26 +2.9 595,692 - Dshi_0602 0.41 +2.2 595,697 - Dshi_0602 0.42 +1.2 595,739 + Dshi_0602 0.53 +0.5 595,743 - Dshi_0602 0.54 +0.9 595,747 - Dshi_0602 0.55 +0.3 595,752 - Dshi_0602 0.56 +2.2 595,794 - Dshi_0602 0.66 -0.3 595,797 - Dshi_0602 0.67 +1.2 595,801 + Dshi_0602 0.68 -1.8 595,843 + Dshi_0602 0.79 +0.4 595,884 + Dshi_0602 0.89 +0.7 595,895 + -2.2 595,914 - -2.0 595,958 + -0.5 595,978 + -0.6 596,009 + -0.2 596,009 + -0.4 596,009 + -1.3 596,009 + -0.8 596,009 + +0.2 596,014 + -0.3 596,032 - +2.7 596,065 + +0.7 596,073 + +0.6 596,073 - +0.1 596,081 - -0.4 596,081 - +0.7 596,090 + -1.7 596,098 - +0.2 596,119 - -2.7 596,122 - -1.6 596,123 + -0.1 596,123 + -1.2 596,123 + -2.5 596,123 + -0.0 596,124 - -0.1 596,131 - +1.4 596,131 - -0.4 596,131 - +1.9 596,131 - -1.9 596,141 - +0.0 596,172 - +0.2 596,175 - -0.5 596,182 - -0.1 596,188 + +2.5 596,191 - +0.4 596,191 - +0.6 596,191 - +0.9 596,191 - +0.6 596,198 + -1.9 596,198 + +0.5 596,198 + -1.1 596,198 + +0.8 596,206 - -0.7 596,206 - -0.7 596,206 - -1.2 596,206 - +0.0 596,208 - -0.7 596,208 - -3.1 596,212 + -0.9 596,212 + +0.2 596,212 + +0.7 596,212 + +1.4 596,215 - +1.2 596,215 - -1.1 596,220 + +1.1 596,220 - -1.5 596,220 - -1.8 596,220 - -0.3 596,220 - +3.2 596,235 - +3.4 596,257 + -1.7 596,268 + +0.2 596,270 + +0.7 596,270 + -0.9 596,275 + -1.7 596,275 + +0.4 596,275 + +0.0 596,275 + -1.2 596,275 + +0.8 596,275 + -1.6 596,275 + +1.3 596,275 + -0.2 596,275 + +0.4 596,275 + -0.1 596,275 + +0.6 596,278 - -1.7 596,283 + +0.2 596,283 + -0.3 596,283 + -0.0 596,283 + -0.1 596,283 + +0.2 596,283 + +0.1 596,283 + -0.6 596,283 + +0.3 596,283 + +0.2 596,283 + -0.7 596,283 - +0.2 596,283 - -1.8 596,283 - -0.2 596,283 - -1.7 596,283 - +1.5 596,283 - +0.1 596,283 - -0.6 596,283 - +0.9 596,283 - +2.2 596,283 - -1.2 596,283 - -0.8 596,283 - -1.0 596,283 - +0.2 596,283 - -0.6 596,283 - -2.9 596,283 - -1.1 596,283 - -0.3 596,283 - +0.3 596,288 - -1.0 596,288 - -0.9 596,291 - -1.0 596,291 - +0.5 596,291 - +1.2 596,291 - +1.2 596,291 - -2.7 596,291 - -2.6 596,291 - +1.3 596,291 - +2.2 596,291 - -0.0 596,291 - +2.2 596,291 - +1.0 596,291 - -0.6 596,291 - +0.8 596,291 - +0.5 596,291 - -0.3 596,291 - +3.5 596,291 - +0.6 596,291 - -0.1 596,292 - -0.0 596,292 - +0.8 596,292 - -2.3 596,293 + -2.3 596,294 + +0.7 596,302 + +0.8 596,302 - -1.7 596,302 - +0.4 596,307 + -0.2 596,309 + +1.1 596,309 + -2.1 596,309 + -1.1 596,309 + -1.2 596,309 + +0.1 596,310 - +2.6 596,316 - +1.4 596,316 - +1.0 596,316 - -2.1 596,316 - +1.1 596,317 - -1.9 596,317 - +1.2 596,317 - -0.8 596,317 - +0.1 596,317 - +0.7 596,317 - -1.8 596,317 - -0.3 596,317 - -0.3 596,319 + +0.2 596,319 + -1.8 596,319 + +0.4 596,319 + -0.3 596,319 + -0.9 596,327 - +0.6 596,327 - -0.9 596,327 - -0.4 596,327 - -2.1 596,327 - -1.7 596,327 - -1.1 596,329 + -0.3 596,337 - +0.2 596,337 - -1.6
Or see this region's nucleotide sequence