Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0364 and Dshi_0365 are separated by 25 nucleotides Dshi_0365 and Dshi_0366 are separated by 6 nucleotides Dshi_0366 and Dshi_0367 are separated by 207 nucleotides
Dshi_0364: Dshi_0364 - protein of unknown function DUF195 (RefSeq), at 347,936 to 349,168
_0364
Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865
_0365
Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441
_0366
Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953
_0367
Position (kb) 349
350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 348.884 kb on - strand, within Dshi_0364 at 348.940 kb on + strand, within Dshi_0364 at 349.123 kb on + strand at 349.190 kb on + strand at 349.281 kb on - strand, within Dshi_0365 at 349.281 kb on - strand, within Dshi_0365 at 349.912 kb on - strand at 349.946 kb on - strand, within Dshi_0366 at 350.079 kb on + strand, within Dshi_0366 at 350.082 kb on - strand, within Dshi_0366 at 350.305 kb on + strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.313 kb on - strand, within Dshi_0366 at 350.376 kb on - strand, within Dshi_0366 at 350.391 kb on - strand at 350.446 kb on + strand at 350.492 kb on + strand at 350.532 kb on + strand at 350.555 kb on - strand at 350.561 kb on - strand at 350.575 kb on + strand at 350.607 kb on - strand at 350.617 kb on - strand at 350.627 kb on - strand at 350.629 kb on + strand at 350.637 kb on - strand at 350.637 kb on - strand at 350.644 kb on + strand at 350.676 kb on - strand at 350.721 kb on - strand at 350.823 kb on - strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.866 kb on + strand, within Dshi_0367 at 350.990 kb on - strand, within Dshi_0367 at 351.006 kb on - strand, within Dshi_0367 at 351.064 kb on + strand, within Dshi_0367 at 351.066 kb on + strand, within Dshi_0367 at 351.113 kb on - strand, within Dshi_0367 at 351.227 kb on - strand, within Dshi_0367 at 351.256 kb on + strand, within Dshi_0367 at 351.269 kb on + strand, within Dshi_0367 at 351.348 kb on - strand, within Dshi_0367
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 348,884 - Dshi_0364 0.77 -0.5 348,940 + Dshi_0364 0.81 +0.9 349,123 + +0.1 349,190 + +1.1 349,281 - Dshi_0365 0.13 -0.4 349,281 - Dshi_0365 0.13 -0.3 349,912 - -2.2 349,946 - Dshi_0366 0.13 -2.3 350,079 + Dshi_0366 0.36 +0.2 350,082 - Dshi_0366 0.37 +1.1 350,305 + Dshi_0366 0.76 -0.6 350,313 - Dshi_0366 0.77 -1.8 350,313 - Dshi_0366 0.77 -1.3 350,376 - Dshi_0366 0.88 -0.4 350,391 - -0.9 350,446 + +0.2 350,492 + +0.2 350,532 + -1.2 350,555 - +1.5 350,561 - -3.6 350,575 + -1.2 350,607 - -0.3 350,617 - +1.3 350,627 - -0.8 350,629 + +0.0 350,637 - -0.8 350,637 - +2.6 350,644 + -0.8 350,676 - -1.9 350,721 - +1.1 350,823 - Dshi_0367 0.13 +0.3 350,866 + Dshi_0367 0.17 -0.1 350,866 + Dshi_0367 0.17 +0.9 350,990 - Dshi_0367 0.26 +0.2 351,006 - Dshi_0367 0.27 -2.3 351,064 + Dshi_0367 0.32 +0.2 351,066 + Dshi_0367 0.32 +1.3 351,113 - Dshi_0367 0.36 -0.4 351,227 - Dshi_0367 0.44 +1.5 351,256 + Dshi_0367 0.47 -0.1 351,269 + Dshi_0367 0.48 +2.4 351,348 - Dshi_0367 0.54 +0.1
Or see this region's nucleotide sequence