Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0354 and Dshi_0355 are separated by 55 nucleotides Dshi_0355 and Dshi_0356 are separated by 50 nucleotides Dshi_0356 and Dshi_0357 are separated by 2 nucleotides
Dshi_0354: Dshi_0354 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 337,582 to 338,226
_0354
Dshi_0355: Dshi_0355 - transcriptional regulator, LysR family (RefSeq), at 338,282 to 339,163
_0355
Dshi_0356: Dshi_0356 - protein of unknown function DUF6 transmembrane (RefSeq), at 339,214 to 340,104
_0356
Dshi_0357: Dshi_0357 - transcriptional regulator, ArsR family (RefSeq), at 340,107 to 340,445
_0357
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 337.532 kb on - strand at 337.594 kb on + strand at 337.613 kb on + strand at 337.613 kb on + strand at 337.624 kb on + strand at 337.794 kb on + strand, within Dshi_0354 at 337.804 kb on + strand, within Dshi_0354 at 337.900 kb on + strand, within Dshi_0354 at 337.908 kb on - strand, within Dshi_0354 at 337.942 kb on + strand, within Dshi_0354 at 337.968 kb on + strand, within Dshi_0354 at 338.059 kb on - strand, within Dshi_0354 at 338.063 kb on + strand, within Dshi_0354 at 338.091 kb on + strand, within Dshi_0354 at 338.187 kb on - strand at 338.315 kb on + strand at 338.421 kb on + strand, within Dshi_0355 at 338.424 kb on - strand, within Dshi_0355 at 338.435 kb on - strand, within Dshi_0355 at 338.471 kb on + strand, within Dshi_0355 at 338.490 kb on - strand, within Dshi_0355 at 338.497 kb on + strand, within Dshi_0355 at 338.547 kb on + strand, within Dshi_0355 at 338.562 kb on - strand, within Dshi_0355 at 338.597 kb on + strand, within Dshi_0355 at 338.743 kb on - strand, within Dshi_0355 at 338.753 kb on - strand, within Dshi_0355 at 338.773 kb on - strand, within Dshi_0355 at 338.798 kb on - strand, within Dshi_0355 at 338.800 kb on + strand, within Dshi_0355 at 338.893 kb on + strand, within Dshi_0355 at 338.893 kb on - strand, within Dshi_0355 at 338.980 kb on + strand, within Dshi_0355 at 338.980 kb on + strand, within Dshi_0355 at 338.985 kb on + strand, within Dshi_0355 at 339.141 kb on - strand at 339.157 kb on + strand at 339.165 kb on - strand at 339.216 kb on + strand at 339.427 kb on + strand, within Dshi_0356 at 339.474 kb on + strand, within Dshi_0356 at 339.533 kb on - strand, within Dshi_0356 at 339.592 kb on + strand, within Dshi_0356 at 339.615 kb on - strand, within Dshi_0356 at 339.698 kb on + strand, within Dshi_0356 at 339.801 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.878 kb on + strand, within Dshi_0356 at 339.923 kb on - strand, within Dshi_0356 at 339.958 kb on + strand, within Dshi_0356 at 339.959 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 340.026 kb on + strand at 340.072 kb on - strand at 340.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 337,532 - -0.7 337,594 + +0.3 337,613 + -0.7 337,613 + -2.3 337,624 + +1.2 337,794 + Dshi_0354 0.33 -0.8 337,804 + Dshi_0354 0.34 -0.8 337,900 + Dshi_0354 0.49 -0.4 337,908 - Dshi_0354 0.51 -0.9 337,942 + Dshi_0354 0.56 +0.8 337,968 + Dshi_0354 0.60 +3.0 338,059 - Dshi_0354 0.74 -1.7 338,063 + Dshi_0354 0.75 -0.1 338,091 + Dshi_0354 0.79 -2.2 338,187 - +1.1 338,315 + +0.7 338,421 + Dshi_0355 0.16 +0.2 338,424 - Dshi_0355 0.16 +0.7 338,435 - Dshi_0355 0.17 -1.3 338,471 + Dshi_0355 0.21 -0.6 338,490 - Dshi_0355 0.24 +1.6 338,497 + Dshi_0355 0.24 -0.6 338,547 + Dshi_0355 0.30 +0.6 338,562 - Dshi_0355 0.32 -0.2 338,597 + Dshi_0355 0.36 -1.1 338,743 - Dshi_0355 0.52 +1.3 338,753 - Dshi_0355 0.53 -0.1 338,773 - Dshi_0355 0.56 +0.4 338,798 - Dshi_0355 0.59 -0.8 338,800 + Dshi_0355 0.59 -2.7 338,893 + Dshi_0355 0.69 -1.8 338,893 - Dshi_0355 0.69 -1.0 338,980 + Dshi_0355 0.79 -2.6 338,980 + Dshi_0355 0.79 -1.2 338,985 + Dshi_0355 0.80 +1.8 339,141 - +0.5 339,157 + +2.0 339,165 - +1.2 339,216 + -0.3 339,427 + Dshi_0356 0.24 +2.2 339,474 + Dshi_0356 0.29 +0.2 339,533 - Dshi_0356 0.36 -1.6 339,592 + Dshi_0356 0.42 +0.2 339,615 - Dshi_0356 0.45 +2.0 339,698 + Dshi_0356 0.54 +0.5 339,801 + Dshi_0356 0.66 -0.6 339,863 + Dshi_0356 0.73 -0.2 339,863 + Dshi_0356 0.73 +2.1 339,878 + Dshi_0356 0.75 -2.5 339,923 - Dshi_0356 0.80 +0.8 339,958 + Dshi_0356 0.84 +0.1 339,959 - Dshi_0356 0.84 -1.9 339,970 - Dshi_0356 0.85 +1.9 339,970 - Dshi_0356 0.85 +2.2 339,970 - Dshi_0356 0.85 -0.8 340,026 + -1.3 340,072 - +0.9 340,093 + -0.1
Or see this region's nucleotide sequence