Experiment: m.b. Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0062 and Dshi_0063 are separated by 122 nucleotides Dshi_0063 and Dshi_0064 overlap by 14 nucleotides Dshi_0064 and Dshi_0065 are separated by 77 nucleotides
Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650
_0062
Dshi_0063: Dshi_0063 - Inositol-phosphate phosphatase (RefSeq), at 63,773 to 64,567
_0063
Dshi_0064: Dshi_0064 - peptidase U62 modulator of DNA gyrase (RefSeq), at 64,554 to 65,900
_0064
Dshi_0065: Dshi_0065 - hypothetical protein (RefSeq), at 65,978 to 67,468
_0065
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 63.616 kb on - strand at 63.645 kb on + strand at 63.645 kb on + strand at 63.653 kb on - strand at 63.698 kb on - strand at 63.711 kb on - strand at 63.857 kb on - strand, within Dshi_0063 at 63.857 kb on - strand, within Dshi_0063 at 63.891 kb on - strand, within Dshi_0063 at 64.002 kb on - strand, within Dshi_0063 at 64.157 kb on + strand, within Dshi_0063 at 64.188 kb on + strand, within Dshi_0063 at 64.259 kb on + strand, within Dshi_0063 at 64.264 kb on + strand, within Dshi_0063 at 64.479 kb on + strand, within Dshi_0063 at 64.569 kb on + strand at 64.606 kb on - strand at 64.613 kb on - strand at 64.641 kb on + strand at 64.855 kb on - strand, within Dshi_0064 at 64.905 kb on - strand, within Dshi_0064 at 65.082 kb on - strand, within Dshi_0064 at 65.240 kb on + strand, within Dshi_0064 at 65.319 kb on + strand, within Dshi_0064 at 65.486 kb on - strand, within Dshi_0064 at 65.696 kb on - strand, within Dshi_0064 at 65.865 kb on - strand at 65.882 kb on - strand at 65.939 kb on - strand at 66.085 kb on - strand at 66.096 kb on + strand at 66.132 kb on + strand, within Dshi_0065 at 66.318 kb on + strand, within Dshi_0065 at 66.475 kb on - strand, within Dshi_0065 at 66.673 kb on - strand, within Dshi_0065 at 66.817 kb on - strand, within Dshi_0065
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 40 mM remove 63,616 - -0.1 63,645 + +0.2 63,645 + -1.5 63,653 - +0.9 63,698 - +0.8 63,711 - +1.6 63,857 - Dshi_0063 0.11 -0.6 63,857 - Dshi_0063 0.11 -0.8 63,891 - Dshi_0063 0.15 -1.9 64,002 - Dshi_0063 0.29 +0.4 64,157 + Dshi_0063 0.48 +0.6 64,188 + Dshi_0063 0.52 +0.6 64,259 + Dshi_0063 0.61 +1.4 64,264 + Dshi_0063 0.62 -0.2 64,479 + Dshi_0063 0.89 -0.9 64,569 + +0.3 64,606 - +2.8 64,613 - +0.6 64,641 + +0.4 64,855 - Dshi_0064 0.22 -0.3 64,905 - Dshi_0064 0.26 -0.8 65,082 - Dshi_0064 0.39 +1.3 65,240 + Dshi_0064 0.51 +0.6 65,319 + Dshi_0064 0.57 +4.2 65,486 - Dshi_0064 0.69 +0.0 65,696 - Dshi_0064 0.85 -0.8 65,865 - +0.6 65,882 - +3.6 65,939 - +0.6 66,085 - -1.8 66,096 + +1.2 66,132 + Dshi_0065 0.10 +0.7 66,318 + Dshi_0065 0.23 +3.2 66,475 - Dshi_0065 0.33 +0.6 66,673 - Dshi_0065 0.47 -0.2 66,817 - Dshi_0065 0.56 +0.6
Or see this region's nucleotide sequence