Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6164

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5768 and Pf6N2E2_6162 are separated by 160 nucleotidesPf6N2E2_6162 and Pf6N2E2_6163 are separated by 22 nucleotidesPf6N2E2_6163 and Pf6N2E2_6164 are separated by 179 nucleotidesPf6N2E2_6164 and Pf6N2E2_6165 are separated by 20 nucleotidesPf6N2E2_6165 and Pf6N2E2_5769 are separated by 92 nucleotides Pf6N2E2_5768 - DNA recombination-dependent growth factor C, at 6,583,253 to 6,584,173 _5768 Pf6N2E2_6162 - tRNA-Val-TAC, at 6,584,334 to 6,584,406 _6162 Pf6N2E2_6163 - tRNA-Asp-GTC, at 6,584,429 to 6,584,502 _6163 Pf6N2E2_6164 - tRNA-Val-TAC, at 6,584,682 to 6,584,754 _6164 Pf6N2E2_6165 - tRNA-Asp-GTC, at 6,584,775 to 6,584,848 _6165 Pf6N2E2_5769 - Catalase (EC 1.11.1.6), at 6,584,941 to 6,586,077 _5769 Position (kb) 6584 6585Strain fitness (log2 ratio) -1 0 1 2at 6583.686 kb on - strand, within Pf6N2E2_5768at 6583.874 kb on - strand, within Pf6N2E2_5768at 6583.875 kb on + strand, within Pf6N2E2_5768at 6583.875 kb on + strand, within Pf6N2E2_5768at 6583.875 kb on + strand, within Pf6N2E2_5768at 6583.876 kb on - strand, within Pf6N2E2_5768at 6584.049 kb on + strand, within Pf6N2E2_5768at 6584.049 kb on + strand, within Pf6N2E2_5768at 6584.050 kb on - strand, within Pf6N2E2_5768at 6584.050 kb on - strand, within Pf6N2E2_5768at 6584.148 kb on + strandat 6584.149 kb on - strandat 6584.152 kb on + strandat 6584.152 kb on + strandat 6584.152 kb on + strandat 6584.153 kb on - strandat 6584.153 kb on - strandat 6584.153 kb on - strandat 6584.193 kb on + strandat 6584.194 kb on - strandat 6584.194 kb on - strandat 6584.194 kb on - strandat 6584.194 kb on - strandat 6584.209 kb on - strandat 6584.228 kb on - strandat 6584.243 kb on + strandat 6584.243 kb on + strandat 6584.367 kb on + strand, within Pf6N2E2_6162at 6584.715 kb on + strand, within Pf6N2E2_6164at 6584.883 kb on + strandat 6584.883 kb on + strandat 6584.883 kb on + strandat 6584.883 kb on + strandat 6584.942 kb on + strandat 6584.942 kb on + strandat 6584.943 kb on - strandat 6584.987 kb on + strandat 6584.987 kb on + strandat 6584.987 kb on + strandat 6584.987 kb on + strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.988 kb on - strandat 6584.998 kb on - strandat 6584.998 kb on - strandat 6585.165 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.188 kb on + strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.189 kb on - strand, within Pf6N2E2_5769at 6585.251 kb on - strand, within Pf6N2E2_5769at 6585.314 kb on + strand, within Pf6N2E2_5769at 6585.314 kb on + strand, within Pf6N2E2_5769at 6585.314 kb on + strand, within Pf6N2E2_5769at 6585.314 kb on + strand, within Pf6N2E2_5769at 6585.315 kb on - strand, within Pf6N2E2_5769at 6585.315 kb on - strand, within Pf6N2E2_5769at 6585.315 kb on - strand, within Pf6N2E2_5769at 6585.315 kb on - strand, within Pf6N2E2_5769at 6585.375 kb on + strand, within Pf6N2E2_5769at 6585.375 kb on + strand, within Pf6N2E2_5769at 6585.375 kb on + strand, within Pf6N2E2_5769at 6585.375 kb on + strand, within Pf6N2E2_5769at 6585.375 kb on + strand, within Pf6N2E2_5769at 6585.377 kb on + strand, within Pf6N2E2_5769at 6585.377 kb on + strand, within Pf6N2E2_5769at 6585.377 kb on + strand, within Pf6N2E2_5769at 6585.378 kb on - strand, within Pf6N2E2_5769at 6585.378 kb on - strand, within Pf6N2E2_5769at 6585.395 kb on + strand, within Pf6N2E2_5769at 6585.395 kb on + strand, within Pf6N2E2_5769at 6585.395 kb on + strand, within Pf6N2E2_5769at 6585.395 kb on + strand, within Pf6N2E2_5769at 6585.395 kb on + strand, within Pf6N2E2_5769at 6585.396 kb on - strand, within Pf6N2E2_5769at 6585.396 kb on - strand, within Pf6N2E2_5769at 6585.396 kb on - strand, within Pf6N2E2_5769at 6585.396 kb on - strand, within Pf6N2E2_5769at 6585.396 kb on - strand, within Pf6N2E2_5769at 6585.451 kb on + strand, within Pf6N2E2_5769at 6585.451 kb on + strand, within Pf6N2E2_5769at 6585.451 kb on + strand, within Pf6N2E2_5769at 6585.451 kb on + strand, within Pf6N2E2_5769at 6585.451 kb on + strand, within Pf6N2E2_5769at 6585.452 kb on - strand, within Pf6N2E2_5769at 6585.452 kb on - strand, within Pf6N2E2_5769

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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6,583,686 - Pf6N2E2_5768 0.47 +2.1
6,583,874 - Pf6N2E2_5768 0.67 +0.5
6,583,875 + Pf6N2E2_5768 0.68 +0.9
6,583,875 + Pf6N2E2_5768 0.68 +0.6
6,583,875 + Pf6N2E2_5768 0.68 -0.6
6,583,876 - Pf6N2E2_5768 0.68 +0.3
6,584,049 + Pf6N2E2_5768 0.86 +0.2
6,584,049 + Pf6N2E2_5768 0.86 +1.5
6,584,050 - Pf6N2E2_5768 0.87 +1.6
6,584,050 - Pf6N2E2_5768 0.87 +1.3
6,584,148 + -0.3
6,584,149 - -1.1
6,584,152 + +0.4
6,584,152 + -0.3
6,584,152 + +1.1
6,584,153 - +1.7
6,584,153 - -0.2
6,584,153 - -0.3
6,584,193 + +0.4
6,584,194 - -1.4
6,584,194 - -0.2
6,584,194 - -0.5
6,584,194 - -0.2
6,584,209 - -1.3
6,584,228 - -0.2
6,584,243 + +0.9
6,584,243 + +0.8
6,584,367 + Pf6N2E2_6162 0.45 +0.7
6,584,715 + Pf6N2E2_6164 0.45 -0.9
6,584,883 + -0.4
6,584,883 + -0.9
6,584,883 + +1.5
6,584,883 + +0.7
6,584,942 + +0.1
6,584,942 + +0.1
6,584,943 - -1.4
6,584,987 + +0.4
6,584,987 + +2.4
6,584,987 + -0.2
6,584,987 + -0.4
6,584,988 - +0.1
6,584,988 - +0.2
6,584,988 - +0.1
6,584,988 - -0.5
6,584,988 - +0.8
6,584,988 - -0.1
6,584,988 - +0.4
6,584,988 - +2.1
6,584,998 - +0.7
6,584,998 - +0.2
6,585,165 + Pf6N2E2_5769 0.20 -1.1
6,585,188 + Pf6N2E2_5769 0.22 -1.7
6,585,188 + Pf6N2E2_5769 0.22 -0.2
6,585,188 + Pf6N2E2_5769 0.22 +0.3
6,585,188 + Pf6N2E2_5769 0.22 +1.1
6,585,188 + Pf6N2E2_5769 0.22 -0.2
6,585,188 + Pf6N2E2_5769 0.22 +0.7
6,585,188 + Pf6N2E2_5769 0.22 -0.3
6,585,189 - Pf6N2E2_5769 0.22 -0.0
6,585,189 - Pf6N2E2_5769 0.22 -0.0
6,585,189 - Pf6N2E2_5769 0.22 +0.6
6,585,189 - Pf6N2E2_5769 0.22 +0.8
6,585,189 - Pf6N2E2_5769 0.22 +1.1
6,585,189 - Pf6N2E2_5769 0.22 -1.4
6,585,189 - Pf6N2E2_5769 0.22 -1.5
6,585,251 - Pf6N2E2_5769 0.27 +0.5
6,585,314 + Pf6N2E2_5769 0.33 -0.5
6,585,314 + Pf6N2E2_5769 0.33 -0.8
6,585,314 + Pf6N2E2_5769 0.33 -0.3
6,585,314 + Pf6N2E2_5769 0.33 -0.9
6,585,315 - Pf6N2E2_5769 0.33 +0.1
6,585,315 - Pf6N2E2_5769 0.33 +0.1
6,585,315 - Pf6N2E2_5769 0.33 +1.4
6,585,315 - Pf6N2E2_5769 0.33 -0.1
6,585,375 + Pf6N2E2_5769 0.38 -1.2
6,585,375 + Pf6N2E2_5769 0.38 +0.7
6,585,375 + Pf6N2E2_5769 0.38 -0.1
6,585,375 + Pf6N2E2_5769 0.38 +0.7
6,585,375 + Pf6N2E2_5769 0.38 +0.2
6,585,377 + Pf6N2E2_5769 0.38 -0.3
6,585,377 + Pf6N2E2_5769 0.38 -0.7
6,585,377 + Pf6N2E2_5769 0.38 -0.2
6,585,378 - Pf6N2E2_5769 0.38 +0.3
6,585,378 - Pf6N2E2_5769 0.38 +0.7
6,585,395 + Pf6N2E2_5769 0.40 +0.6
6,585,395 + Pf6N2E2_5769 0.40 -0.0
6,585,395 + Pf6N2E2_5769 0.40 +0.3
6,585,395 + Pf6N2E2_5769 0.40 -1.0
6,585,395 + Pf6N2E2_5769 0.40 -0.1
6,585,396 - Pf6N2E2_5769 0.40 +0.2
6,585,396 - Pf6N2E2_5769 0.40 -1.4
6,585,396 - Pf6N2E2_5769 0.40 +0.3
6,585,396 - Pf6N2E2_5769 0.40 -1.1
6,585,396 - Pf6N2E2_5769 0.40 -0.6
6,585,451 + Pf6N2E2_5769 0.45 +0.1
6,585,451 + Pf6N2E2_5769 0.45 +1.1
6,585,451 + Pf6N2E2_5769 0.45 +0.3
6,585,451 + Pf6N2E2_5769 0.45 -0.0
6,585,451 + Pf6N2E2_5769 0.45 -0.4
6,585,452 - Pf6N2E2_5769 0.45 +0.2
6,585,452 - Pf6N2E2_5769 0.45 -0.2

Or see this region's nucleotide sequence